Rhizobium lusitanum: HB780_18795
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Entry
HB780_18795 CDS
T07787
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rls
Rhizobium lusitanum
Pathway
rls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HB780_18795 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rls03021
]
HB780_18795 (rpoD)
Transcription machinery [BR:
rls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HB780_18795 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Ribophorin_II
Phage_DsbA
DUF4351
DUF3106
Motif
Other DBs
NCBI-ProteinID:
QND47720
LinkDB
All DBs
Position
complement(1015318..1017384)
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AA seq
688 aa
AA seq
DB search
MATKVKENEEAEVERDGTSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEDVEEAGTATSSNDDDDSNDDEGGEGGELAPSTGSALATA
KKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIGGLCESPLTFQALI
IWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKETARRGRSPS
GGDDITDVGGEGLPGEEEEDDEDESSLSLAAMEAELRPQVMTTLDTIAETYKKLRKLQDQ
QVEQRLSASGTLSSAQERRYKELKDELVKSVKSLSLNQNRIDALVEQLYDINKRLVQNEG
RLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKSENTTIRDIRQEIQ
NLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVR
TSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIED
KNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE
RIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagaaaacgaagaagctgaagtcgaacgcgacggcacctccgat
ggcccgcttctcgacctttccgatgacgcggtcaaaaaaatgatcaaggccgcgaagaaa
cgcggctacgtgacgatggacgagcttaacgctgtcctgccgtccgaagaagtgacgtcc
gaacagatcgaagacacgatggcgatgctgtccgatatgggcatcaacgtcattgaggac
gaggacgtcgaagaggcgggtacggcaaccagcagcaacgacgacgacgattccaacgac
gatgagggcggggaaggcggcgagctcgcaccttccaccggttcggcgctggcaaccgcc
aagaagaaagaaccgaccgaccggaccgacgacccggtgcgcatgtatctgcgcgaaatg
ggctccgtcgaactgctgtcgcgcgaaggcgaaatcgcgatcgcgaagcgcatcgaggct
ggtcgtgagaccatgatcggtggtctctgtgagagcccgttgacgttccaggcgctgatc
atctggcgtgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaa
accacctattccggcccggaagccaaggcggcaccacagttccagagcccggaaaagatc
gaagcggaccgcaaggctgctgaagaaaaggaaacagcccgtcgtggtcgttcgccctct
ggtggtgacgacatcaccgatgtcggcggcgaaggtttgccgggtgaggaagaagaagac
gacgaggacgaatccagcctctcgctcgctgcgatggaagccgagcttcgcccgcaggtg
atgacgacgctcgatacgatcgccgaaacctacaagaagctgcgcaagctgcaggaccag
caggtcgagcagcgcctgtcggcatcgggtactctgtcgtcggcgcaggagcgccgctac
aaggagctgaaggacgagctggtcaagtcggtcaagtctctgtcgctgaaccagaaccgc
atcgacgctctggtcgagcagctctatgacatcaacaagcgtctcgtacagaacgaaggc
cggttgttgcgccttgccgaatcctacggcgtcaagcgcgactcgttcctcgaacagtat
cagggcgccgaacttgatccgaactggatgaagtcgatcggcaatctggccgcccgcggc
tggaaggaattcgccaagagcgaaaacaccacgatccgcgatatccgccaggaaattcag
aaccttgcgactgaaaccgggatttccatctcggaattccgccgcatcgtgcatatggtg
cagaagggcgagcgcgaagcgcgtatcgccaagaaggaaatggtcgaagcgaatcttcgc
ctcgtcatctccatcgccaagaaatacaccaaccgtggtcttcagttccttgaccttatt
caggaaggcaatatcggcctgatgaaggcggtcgataagttcgaatatcgtcgtggttac
aagttctcgacttacgccacctggtggattcgtcaggcgatcacccgttcgatcgccgac
caggcccgcacgatccgtattccggtgcacatgatcgaaacgatcaacaagatcgttcgc
acatcgcgccagatgctgcacgaaatcggccgcgagccgacgccggaagaattggctgaa
aagctcgccatgccgctcgaaaaagtgcgcaaggtgctgaagatcgccaaggaaccgatc
tcgctcgaaacgcctgttggtgacgaagaagattcgcatcttggcgatttcatcgaggac
aagaacgcgcttctgccgatcgatgccgccattcaggccaacctgcgcgagacgacgacc
cgcgtgctggcatcgctaacgccgcgtgaagaacgcgtgctgcgcatgcgcttcggcatc
ggcatgaacaccgaccatacgctcgaagaagtcggacagcagttctcggtcacccgcgaa
cgtatccgccagatcgaagccaaggcgctgcgcaagctgaagcatccgagccgcagccgc
aagctgcgttcgttcctggacagctaa
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integrated database retrieval system
