Rhizobium lusitanum: HB780_19680
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Entry
HB780_19680 CDS
T07787
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rls
Rhizobium lusitanum
Pathway
rls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HB780_19680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rls03019
]
HB780_19680
Enzymes [BR:
rls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HB780_19680
Messenger RNA biogenesis [BR:
rls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HB780_19680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
AAA_22
Utp25_C
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
QND47881
LinkDB
All DBs
Position
1204219..1205880
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AA seq
553 aa
AA seq
DB search
MVRPGLFALAPPKGIELTDFNSLGLSKQIVDTLTLNNFTTPTPIQAQAIPLVLSGRDLIG
LAQTGTGKTAAFGLPIIEMLLKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRKTAL
KINVVVGGASINKQQLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDL
GFIHDLRKISKMVPAKRQTMLFSATMPKTIADLASEYLTNPVTVAVSPPGKAADKVEQYV
HFVSGQNHKTEILKETISANPDGRAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQ
RERALKGFRDGEVRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEARLLRDIERLMGIDIAVASGEAPADRGRPARGNNRAGGRAGQGQGQGRGG
AGQARAEGRPARPARRPHREGEAGAHNGERQERRPQRENNRNADFRGQRRDERAPRPEVD
NDLASTSDFRPAKKPQHNGAANEAGAHRGPRHAHGRPTGRHEDRGQNAQGEQRKDGSGQR
RGPGNGGQRRERA
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgacccggcctatttgctttggcgcccccgaaaggtattgaattgaccgatttt
aactcgcttggtctctccaagcagatcgtcgatacactgacgctgaacaacttcacgacg
ccgacgccaatccaggcacaggctattccgcttgtcctcagtggccgcgatcttatcggc
ctcgcccagaccggcaccggcaagaccgccgctttcggcctgccaatcatcgaaatgctg
ttgaaggacgccaagcgtcccgacaaccgcaccgtccgtacgcttatcctcgcccccacc
cgcgaactggtgaatcagatcgctgacaacctcaagctcttcgtccgcaagacggcgctg
aagatcaatgtcgtcgtcggtggcgcctccatcaacaagcagcagctgcagctcgagcgt
ggcaccgacattctcgtcgccacccccggccgcctgctcgacctcatcagccgccgcgcc
ctgtcgcttggccaggtgagctacctcgtcctcgacgaggccgaccagatgctcgacctc
ggcttcatccacgacctgcgcaagatctccaagatggtcccggccaagcgccagaccatg
ctgttctcggccaccatgccgaagacgatcgccgatctggcctccgaatacctgaccaat
ccggtcacggtcgcagtctcgcctcccggcaaggccgccgacaaggtggagcagtatgtc
cacttcgtttccggtcagaaccacaagaccgagatcctgaaggaaacgatttccgccaat
cctgatggccgcgccatggtcttcctgcgcaccaagcatggtgccgagaagctgatgaag
catcttgaacacgtcggctttgccgccgcctccatccacggcaacaagagccagggtcag
cgcgagcgtgccctgaagggcttccgtgacggcgaagtccgcgttctcgtcgccaccgac
gtcgctgctcgcggcatcgatatccccggcgttacgcatgtctacaactacgacctgccg
gaagtaccggatgcctacgtccaccgcatcggccgtaccgcacgcgccggccgcgacggc
atcgccatcgccttctgcgcgcccgacgaagcccgcctgctgcgcgacatcgagcgcctg
atgggcatcgacatcgccgttgccagcggcgaagctcctgccgaccgtggccgtccggct
cgcggcaacaaccgcgcaggcggtcgtgctggccagggtcaaggccagggtcgtggtggc
gcaggccaggcacgtgccgaaggtcgccccgcccgtccggcccgtcgccctcatcgcgaa
ggtgaagccggcgctcataacggcgagcgtcaggaacgtcgtccgcagcgcgaaaacaat
cgcaatgccgacttccgcggccagcgtcgtgacgagcgcgcaccgcgtccggaagtagac
aacgatctcgcatcgacgtccgatttccgtccggccaagaagccgcagcacaatggcgcg
gcaaacgaagccggcgcccatcgcggcccccgtcacgctcacggccgccctacgggtcgc
catgaagatcgtggccagaacgctcagggcgaacagcgcaaggacggcagcggccagcgc
cgcggccccggcaatggcggccagcgtcgcgaacgcgcttaa
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