Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_1730
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Entry
Rleg2_1730 CDS
T00779
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rlt
Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rleg2_1730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlt03400
]
Rleg2_1730
Enzymes [BR:
rlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rleg2_1730
DNA repair and recombination proteins [BR:
rlt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rleg2_1730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACI55017
UniProt:
A0ABF7QLW1
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All DBs
Position
1768243..1771746
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AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPVGLEPLLLAELARAGEPVAYVISDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRRKPHAAIVLVTANAMLQK
VAPQDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPLFYEKLDTVFDYLSGFRIVTDNTVREAAEERSKL
VFDYCDARLHSGQPAKGQMAQGTPYKPVTPGQLYLDSKLFAKTLDALGAIRISPFNEIEG
EARRVVNIEARQGQRWARSNAEGGGDAERINIFDVVVKHIADRRAAGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPIEALKDLGSLAKGEAAAAVLNLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTEAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPMLTTPDGLYDEFAARFPYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAIVVPTTLLSRQHFKTFSERFRGLPVRIQQASRLVGAKELALTKK
EVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGAMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccattgccgagccgctgacgatcggc
aatgtgcctgtcggcctcgaaccgctgctgctggctgagctcgcccgcgcgggcgagcca
gtcgcctatgtcatatcagacggccaccgcatggccgatctcgaacagatgctgggcttc
gtcgcccccgacattccggttctcaccctgccggcctgggactgtctgccctatgaccgc
gtctcgccgagcgccgatacttcggcccgccggcttgccgcactcggcggcctcatcgcc
caccggaggaagccgcatgcggcgatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcaggatgtcatcgaaagcctgagcttttcggcccgtcccggcaaccagctg
cggatggacgatctcgccgggcgcctggaacgcaacggcttcgaccgcgtcgcaaccgtt
cgcgaagtcggcgaatatgccgtgcgcggcggcattctcgacgtcttcgtgccgggttcg
gaagagccggtccgcctcgacttcttcggcgacacgctggaatcgatccgcagcttcgat
ccggccagccagcgcaccaccggccaggtgcgctccctcgatctcaatccgatgagcgag
gtgacgctgacgccggacacgatcagccgcttccgcaagaattatctctcggctttcggc
gcaacgacgcgtgacgacgcgctctatctcgccgtctccgaaggtcgccgttatccgggc
atggagcactggctgccgcttttctatgagaagctcgataccgtcttcgattatctcagc
ggcttccgtatcgtcaccgacaacacggtgcgtgaggcggccgaggagcgatccaagctg
gttttcgattattgcgacgcccgcctgcattccggtcagccggccaagggccagatggcg
cagggcacgccttataagccggtgacgccgggccagctctatctcgacagcaagcttttc
gccaaaaccctcgacgcgctcggcgcgatccgcatcagccccttcaacgaaatcgaaggc
gaggcgcgccgcgtcgtcaatatcgaggcccgccaaggccagcgctgggcccgctcgaat
gccgaaggcggcggcgatgccgagcgcatcaacattttcgacgtcgtcgtcaagcatatc
gccgaccgccgcgctgccggcgcgaaagtgctggtcaccgcctggaccgaaggctcgctg
gagcgcctgctgcaggtgctgaacgaacacggcctggaaaaggtcaagccgatcgaggcg
ttgaaggatctcggttcgctggcgaagggcgaggccgccgccgcggtgctcaatctcgaa
tccggattcgaggctggcgatctcgtcgtcatcggcgagcaggatattctcggcgaccgc
atggtgcgccgctccaagcgccgcaaacgcgccgccgatttcatcgccgaggtcgccggc
ctcgacgagggctcgatcgtcgtccacgccgaacacggtatcggccgcttcatcgggttg
aagaccatcgaggccgcgggcgcgccgcatgcctgcctcgaactgcaatatgccgacgag
gcgaaactcttcctgccggtcgaaaacatcgatcttctctcccgctacggcggcgagggc
accgaggcgcagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctg
aagaagcgcctgctcgacatggccgatgcgctgatccgcattgccgccgagcggctgacc
cgccacgcaccgatgctgacgacgccggacggcctatacgacgaatttgccgctcgcttc
ccctatgatgagaccgaggaccaggacaacgccatcgacgccgtccgctccgatctcggc
gccggccggccgatggatcgtctcgtctgcggcgacgtcggcttcggcaagacggaagtg
gccttgcgcgccgccttcgtcgccgcgatgaatggcgtccaggttgccatcgtcgtgccg
acgacactgctttcccgccagcatttcaagaccttttccgagcgattccgcggcctgccg
gtgcgcatccagcaagcctcacgcctggttggggccaaggaactggcgctgaccaagaag
gaagtcgccgaaggcaagaccgatatcgtcgtcggcacccatgcgctgctcggcgccggc
atcaaattcgccaatctcggcctgctcgtcatcgatgaggagcagcatttcggtgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcatgtgctgacgctgtcggcgacg
ccgatcccgcgcacactgcagcttgcgatgaccggcgtgcgcgaactatcgctgatcacc
acgccgccggtcgaccgtatggcggtgcgcaccttcatctcgcccttcgacagcttggtc
atccgcgagacgctgatgcgcgagcattatcgcggcggccagagcttctatgtctgcccg
cggcttgctgatctcgccgatgtgcatgccttcctgcagtccgacgtgccggagctgaag
gtcgccgtcgcccacggccagatgccggccggcgaactcgaagacatcatgaacgccttc
tatgaaggccgctacgacgtgctgttgtccacaaccatcgtcgaatccggcctcgatgtg
ccgacggccaacacgctgatcgtccaccgcgccgatatgttcggccttgcccagctctac
cagctgcgcggccgcgtcggccgctcgaaggtgcgcgccttcgcgctcttcaccctgcct
gtgaataaggtgctgacggcaaccgccgaccgccggctgaaggtgctgcagtcgctggat
acactcggcgccggcttccagctggccagccacgacctcgatatccgcggcgccggcaac
ctgctcggcgaggagcagtccggccacatcaaggaagtcggcttcgaactctaccagcag
atgctggaagaggcggtcgccgaggtcaagggtgtcgacgagatccacgacaccggctgg
tcgccgcaaatctccgtcggcacgacggtgatgatcccggagggctatgtgcccgacctg
catttgcgcatggcgctttaccgccgtctcggcgaaatcaccgaactcaaggagatcgac
ggcttcggcgccgagatgatcgaccgtttcgggccgatgccgatcgaagtccagcatctc
ttgaagatcgtctacatcaagtcgctctgccgcaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtcgtcgtgcagttccgcaacaaggaattccccaacccggcgaatctc
gtcggctatatcggcaagcagggcgccatggcgaagatccgccccgaccacagcctgttc
ctgacccgcgacctgccgacaccggaaaaacgcctgcagggcgctgccgtgatcatgacg
cagctggccgagatggcgaaataa
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