Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_2896
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Entry
Rleg2_2896 CDS
T00779
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlt
Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rleg2_2896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlt03019
]
Rleg2_2896
Enzymes [BR:
rlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rleg2_2896
Messenger RNA biogenesis [BR:
rlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rleg2_2896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
AAA_19
AAA_22
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACI56164
LinkDB
All DBs
Position
2947408..2949111
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AA seq
567 aa
AA seq
DB search
MTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL
IEKLLADERRPDNRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQL
QLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK
RQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKS
LTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL
IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRD
IERLMGIDIAVASGEAPANISSAGPRRGNGNGNNRNRGGGQGREGQGRGEGRGDQNRSEH
RGSRQERRPRREGEGSEVRAGGEERRERRPRPERTSRNEDFRGQRRGEATPNLGPDNDLV
STSDFRPSAKPQRPAHGGPNSHHANGEPSGHHRGNNRHAHGRPARKHGEDRGPQQAQGGE
PRREGNGGNRRGGSGSRNGGGQRRERA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
ttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctc
ggcatcgaaacgccgacgccgatccaggaacaggccatccctctcctcctcgaaggccgc
gacctgatcggccttgcccagaccggcaccggcaagaccgccgccttcggcctgccgctc
atcgaaaaattgcttgccgacgagcgccgccccgacaaccgcacgacgcggacgctgatc
ctggcgccgacccgcgaactggtgaaccagatcgccgagaccctgaagaagttcatccgc
aagtcgcatctgcgcatcaacgtcgtcgtcggcggcgtttcgatcaacaagcagcagctt
cagctcgaaaagggcaccgatgtcctcgtcgccacgcccggccgcctgcttgacctcatc
aatcgccgcgccatctcgctgaccacggtccgctatctcgtgcttgatgaagccgaccag
atgctcgacctcggcttcgtccacgatctgcgcaagattgccaagatggtgccgaagaag
cgtcagaccatgcttttctcggccaccatgccgaaggcaatcgccgatctcgccggcgac
tacctcgtcgatccggtcaaggtcgaagtcacacctcccggcaaggctgccgacaaggtc
gagcaatatgtccatttcgtcgccggcaagaacgacaagacggaactgctgcgcaagtcg
ctgaccgaaaaccccgatggccgcgccatcgtcttcctgcgcaccaagcatggtgcggag
aagctgatgaagcatctcgaaaacatcggctattccgtcgcctcgatccatggcaacaag
agccagggccagcgcgagcgggcgctgaaggcgttccgcgatggcagcatcaagacgctg
atcgccaccgacgttgccgcccgcggtatcgacatcccggccgtcagccatgtctacaac
tacgacctgcccgaagtgcccgacgcctatgtccatcgcatcggccgcacggcgcgcgcc
ggccgcgacggcatcgcgatcgcgttctgcgcccccgacgaagccaagctgctgcgtgat
atcgagcgcctgatgggcatcgacatcgcagtcgcaagcggcgaagcaccggccaatatc
agcagcgccggcccgcgccgcggcaacggcaatggcaacaaccgcaatcgcggtggcggc
cagggtcgcgaaggccagggtcgcggcgaaggccgtggcgatcagaaccgctcggagcat
cgcggcagccgccaggaacgccgcccgcgccgtgaaggcgaaggcagcgaagtgcgtgcc
ggtggcgaggagcgccgcgagcgccgtccgcgtcccgaacgcacgagccgcaacgaggat
ttccgcggccagcgccgcggcgaagccacccccaatctcggccccgacaacgatctggtc
tcgacctcggatttccgtccctcggcaaagccgcagcgtcctgcccatggcggccccaat
agccatcatgccaatggcgagccgagcggtcatcaccgcggcaataaccgccacgcccac
ggccgcccggcccgcaagcacggcgaagaccgcggcccgcagcaggcccagggcggcgaa
ccgcgccgcgagggcaatggcggcaaccgccgcggcggctccggctcccgcaatggcggc
ggccagcgccgcgaacgcgcctga
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