Rhizobium leguminosarum bv. trifolii CB782: RLEG12_24690
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Entry
RLEG12_24690 CDS
T03015
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RLEG12_24690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlu03021
]
RLEG12_24690
Transcription machinery [BR:
rlu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RLEG12_24690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Phage_DsbA
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
AHG46240
LinkDB
All DBs
Position
complement(2611768..2613825)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDSGGDEESEGGELAPSSGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFARGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaagccgccaaaaag
cgcggctatgtgacgatggacgagctcaacgccgtcctgccgtctgaagaagtgacgtcc
gagcagatcgaagacacgatgtcgatgttgtcggacatgggcatcaacgtcatcgaagat
gaagaggccgaggaagccggtgcttccggcggcggcgatgacgacgatagcggcggcgac
gaagagagcgaaggcggcgaactcgcaccttcgagcggcacggcgctcgcgacagccaag
aagaaagagccgaccgaccgcaccgacgatccggtgcgcatgtacctgcgcgaaatgggc
tcggtggagcttctctcccgcgagggcgaaatcgccatcgccaagcgcatcgaggccggc
cgcgaaacgatgatcgcgggcctctgcgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgttgcgcgagatcatcgatctcgaaacc
acctattccggtcccgaagccaaggctgcgccgcagttccagagccccgagaaaatcgag
gccgaccgcaaggcggccgaggaaaaggaaaagacccggcgcgcccgctccggcgacgac
gacatcaccgatgtcggcggcgaaggcctgcctcccgaggaggaggaagaggacgaggac
gaatccaacctttcgctggcggcaatggaagccgagcttcgcccgcaggtgatggagacg
ctggatacgatcgccgagacctacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgcctgtcggcatccggcacgctgtcttcagcccaggagcgccgctacaaggaactc
aaggacgagttgatcaaggccgtcaagtcgctgtcgctcaaccagaaccgcatcgacgct
ctggtcgagcagctctacgacatcaacaagcgcctcgtttccaacgaaggccgcctgctg
cgtctggccgaatcctacggcgtcaagcgcgatagcttcctggaacaataccagggtgcc
gagctcgatccgaactggatgaagtcgatcggtaatctggccgcccgcggctggaaggaa
ttcgcccgcggcgaaaatacgacgatccgcgatatccgtcaggagatccagaatctcgcc
accgagaccggcatttcgatttcggaattccgccgcatcgtgcacatggtgcagaagggc
gagcgcgaagcccgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatc
tccatcgccaagaaatacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggctacaagttctcg
acctatgcgacatggtggatccgtcaggcgatcacccgttcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgttcgtacctcgcgc
cagatgctgcacgagatcggccgcgagccgacgccggaagaactggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcttgaagattgccaaggagccgatctcgctcgaa
accccggtgggcgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgctgccatccaggcgaacctgcgcgagacgacgacccgcgttctc
gcctcgctgacgccgcgcgaggaacgtgtgctgcgcatgcgcttcgggatcggcatgaac
accgatcatacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaagctgaagcatccgagccgctccaggaagctcaga
agcttcctcgacagctga
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