Rhizobium leguminosarum bv. trifolii CB782: RLEG12_25725
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Entry
RLEG12_25725 CDS
T03015
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RLEG12_25725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlu03019
]
RLEG12_25725
Enzymes [BR:
rlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RLEG12_25725
Messenger RNA biogenesis [BR:
rlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RLEG12_25725
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
Flavi_DEAD
AAA_22
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHG46429
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All DBs
Position
2819863..2821506
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AA seq
547 aa
AA seq
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MTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL
IEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSPLRINVVVGGVSINKQQL
QLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPKK
RQTMLFSATMPKAIADLAGDYLVDPVTVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKS
LTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTL
IATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRD
IERLMGIDITVASGEAPAHIGAAGPRRANGNGNNRNRGNGQGRGGEGRGGEGRGGEGRSE
HRGNRQERRPRPERTARNEDFRGQRRGEAAPNLGPDNDLVSTSDFRPSAKPQRPAHNGPN
GHHANGEPSGHHRGNGRHAHGRPARKHGEDRGPQQAQGGEPRRDGNGGNRRGGSGARNGG
GQRRERA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
ttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctc
ggcatcgaaacgccgacgccgatccaggaacaggccattcccctcctgcttgaaggccgc
gacctgatcggcctcgcgcagaccggcaccggcaaaaccgccgcctttggcctgccgctc
atcgaaaagctgctcgccgacgaacgccgtcccgacaaccgcacgacgcggacgctgatc
ttggcgccgacccgcgaactggtgaaccagattgccgagagcctgaagaagttcatccgc
aagtcgccgctgcgcatcaatgtcgtcgtcggcggtgtgtcgatcaacaagcagcagctt
cagctcgaaaaaggcactgatgtcctggtcgccacgcctggccgcctgctcgacctcgtc
aatcgccgcgcgatcacgctgaccacagtgcgttatctcgtgctcgacgaagctgaccag
atgctcgacctcggcttcgtgcacgatctgcgcaagatcgccaagatggtgccgaaaaag
cgccagaccatgttgttttcggccaccatgccgaaggcgatcgccgatctcgccggtgac
tatctcgtcgatcccgtcacggtcgaagtcacgccgcctggcaaggcggccgacaaggtc
gaacagtacgtccatttcgtcggcggcaagaacgacaagacggaactgctccgcaagtcg
ctgaccgaaaaccctgatggccgcgccatcgtcttcctgcgcaccaaacatggtgccgag
aagctgatgaagcatctcgagaatatcggctattccgtcgcctcgatccacggcaacaag
agccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagacgctg
atcgccaccgacgttgccgcccgcggcatcgacatcccggccgtcagccacgtctacaac
tacgacctgcccgaggtgccggacgcttatgtccatcgcatcggccgcacggcgcgcgcc
ggccgcgacggcatcgcgattgcgttctgcgctcctgacgaagccaggctgctgcgtgac
atcgagcgcctgatgggcatcgacatcacggtcgccagcggcgaagcgccggcacatatc
ggcgccgccggcccgcgccgcgccaacggcaatggcaacaaccgcaatcgcggcaacggc
cagggtcgcggcggcgagggtcgcggtggcgaaggccgcggcggcgaaggtcgctccgag
catcgcggcaaccgccaagagcgccgtccgcggcccgaacgcacggctcgcaatgaggat
ttccgcggccagcgccgcggcgaagccgccccgaatctcggccccgacaacgatctggtc
tcgacctccgacttccgcccctcggcaaagcctcagcgtcctgcccataacggccccaat
ggccaccatgccaatggcgagccgagcggccatcaccgcggcaacggccgccatgcccac
ggccgtccggcccgcaagcacggcgaggaccgcggcccgcaacaggcccagggcggcgaa
ccacgccgcgacggcaacggcggcaatcgccgtggcggctccggcgcccgcaatggcggt
ggccagcgtcgcgaacgcgcttga
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