Rhizobium laguerreae: RlegWSM1455_15870
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Entry
RlegWSM1455_15870 CDS
T08814
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rlw
Rhizobium laguerreae
Pathway
rlw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rlw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RlegWSM1455_15870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlw03019
]
RlegWSM1455_15870
Enzymes [BR:
rlw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RlegWSM1455_15870
Messenger RNA biogenesis [BR:
rlw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RlegWSM1455_15870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
Flavi_DEAD
AAA_22
CMS1
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UFW66761
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All DBs
Position
3127424..3129157
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AA seq
577 aa
AA seq
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MVRSGDSHCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEHAIPLLLEGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAESLKKFIRKSSL
RINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDL
GFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDITVASGEAPAIVSGGPRRANGNGNNRNRNGGQGREG
QGRGEGRGDQNRSEHRGSRQERRPRREGEGSEVRAGGEERRPRPERPTSRNEDFRGQRRG
ETTPALGPDNDLASTSDFRASAKPQRPAHHGAHANGEPSGHHRGNSRHAHGRPARKHGED
RGPQQAQAGEPRRDGNSGNRRGGSGSRNGGGQRRERA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggcgatagtcattgtggcgccccgaaaggttataccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgctactttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacatgccattcctctcctcctcgaaggccgcgaccttatcggc
cttgcccagaccggcaccggcaagacggccgctttcggtctgccgctgatcgaaaagctg
ctggccgacgaacggcgccccgacaaccgcacgacgcgcacgctgatccttgcgccgacc
cgcgaactggtgaaccagatcgccgagagcctgaagaagttcatccgcaagtcgtcgctg
cgcatcaatgtcgtggtcggcggcgtctcgatcaacaagcagcagcttcagcttgaaaag
ggcaccgacattctcgtcgccacgcccggccgactgctcgacctcatcaatcgccgcgcg
atcacgctgactgcggttcgctatctcgtgctcgacgaagccgatcagatgcttgacctc
ggtttcgtgcatgatcttcgcaagatcgctaagatggtgccgaaaaagcgccagaccatg
ctcttctcggccaccatgccgaaggcgattgccgatctcgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcctccaggtaaggctgcagacaaggtcgagcagtacgtt
catttcgtcgccggcaagaacgacaagacggagctgctccgcaagtcgctgaccgaaaac
cccgatggccgcgccatggtcttcctgcgcaccaagcacggtgccgagaagctgatgaag
catctcgaaaacatcggctattccgtcgcctcgatccacggcaacaagagccagggtcag
cgcgagcgggcgctgaaagccttccgcgacggtagcatcaagacgctgatcgccaccgac
gtcgccgcccgcggcatcgacattccggccgtcagccacgtctacaactacgacctgcct
gaagtgcctgacgcctatgtccatcgcatcggccgtacggcgcgtgccggccgcgacggt
atcgccatcgccttctgcgcccctgacgaagccaaactgctgcgtgatatcgaacgcctg
atgggcatcgacatcactgtcgcaagcggcgaagcgccggcaatcgtcagcggcggaccc
cgtcgcgccaacggcaacggcaacaaccgcaatcgcaatggcggccagggtcgcgaaggt
cagggtcgtggcgaaggccgtggcgaccagaaccgctccgagcatcgcggcagccgtcag
gaacgccgcccgcgtcgcgaaggtgaaggcagcgaagtccgcgccggcggcgaagagcgt
cgtccgcgtccggagcgcccgaccagccgcaacgaggacttccgcggtcagcgccgcggt
gaaacgaccccggctctcggccccgacaatgatctggcctcgacctccgatttccgcgcc
tctgcaaagccgcagcgtccggcccatcacggcgcccatgccaatggtgagccgagcggt
catcaccgcggcaacagccgccatgcccacggccgcccggcccgcaagcatggcgaggac
cgcggcccgcagcaggcccaggccggcgaaccgcgccgggacggcaacagtggcaaccgt
cgcggtggctccggctcccgcaacggcggcgggcagcgccgcgaacgcgcctga
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