Rhizobium laguerreae: RlegWSM1455_21660
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Entry
RlegWSM1455_21660 CDS
T08814
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rlw
Rhizobium laguerreae
Brite
KEGG Orthology (KO) [BR:
rlw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rlw03019
]
RlegWSM1455_21660 (hrpB)
Enzymes [BR:
rlw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RlegWSM1455_21660 (hrpB)
Messenger RNA biogenesis [BR:
rlw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RlegWSM1455_21660 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
CON_HrpB
AAA_30
HA2_N
Flavi_DEAD
AAA_19
nSTAND3
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UFW64085
LinkDB
All DBs
Position
complement(4359254..4361719)
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AA seq
821 aa
AA seq
DB search
MTISASLPELPVSHVLPAVATALEKQKRAVLSAPPGAGKTTLVPLYLLDKAWRGDGKIIL
LEPRRLAARAAASRMASLIGEQVGETVGYRMRLDNRISAATRIEVVTEGVFARMILDDPE
LNGVSVVIFDEFHERSLDADFGLALALDVQSALREDLHILVMSATLDVERVAGLLDHPPV
IESLGRSFPIDIRYQDRPGGERIEDAVTRAILDAHANEGGSILAFLPGQAEITRTFERLQ
ARFGAETLIAPLYGNLSQKEQDAAIRPASQGTRKIVLATSIAETSITIDGVRIVIDSGLQ
RLPVFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAVRLWHQGQTAALPAFTPPQIL
SSDLSGLVLDLAHWGVQDPASLAFVDQPPETTLREARVLLGQLGALDKDGALTARGKMMR
DLALPPRLAAMVVSAGEAGQARDAAMIAVLLTEQGLGGTSVDIEERLRRFKAERGERAEA
SRRLAGRLASGLDRGASAAPALAGQLLLHAFPDRIALQRGGRGRFVMANGRGAELPETER
LAGSQMLVIADLTGRAAQARVLAAAEVTRGDIEAELPGEIKTGDQIFFDRQSRQIRARRA
TRLGAIVFEETPLPRPSGAAVTQALVEGVRELGLDQLVFSKDAVQLRERIGFLHRTIGEP
WPDVSDDALLSRLDDWFAPFQTEARGLSEISAAGLSNGLMSLVPHELQRDLSRLAPTHFE
APTGQRHPIQYEGEEPVLTIRVQELFGLKQHPAIAGGRLPLLLELTSPAHRPIQTTRDLP
GFWAGSWKDVRADMRGRYPRHPWPERPEDALPTTRAKPRGT
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgacaatcagtgcatccttgccggagcttccggtttcacatgtcctgccggccgtcgct
accgcgctggaaaagcaaaaacgcgccgttctttccgccccgcccggcgccggcaagacg
acgctggtaccactctatctgctcgacaaggcctggcgcggcgacggcaagatcatcctg
ctggagccgcggcggctggcggcgcgagcagcggcaagccggatggcatcgctcatcggc
gaacaagtcggcgagactgtcggctatcgcatgcgcctcgacaacaggatatcggcagcg
acacggatcgaggtcgtgaccgaaggggttttcgcccggatgatcctcgacgatccggaa
ctgaacggcgtctcggtcgtgatcttcgacgagttccacgagcgttcgctggacgcggac
ttcggactcgctctggcactcgatgtccagtcggcgctgcgcgaggatctgcacatcctg
gtcatgtcggcgaccctcgatgtcgaacgcgtggccggcttgctcgaccatccacctgtt
atcgaaagcctggggcgcagctttccgatcgatatccgttaccaggatcggccgggcggc
gagcgtatcgaggatgcggtgacgcgggcgatactcgatgcccatgccaacgagggcggc
tcgatcctcgccttcctgcccggccaggcggaaatcacccggaccttcgaacgactgcag
gcgcgattcggagccgaaactctgattgcgcccctttacggcaatctcagccagaaggag
caggatgcggcgatccggccggcatcccaggggacgcgcaagatcgtgcttgcgacatcg
atcgccgaaacatcgatcaccatcgacggtgtcaggatcgtgatcgacagcgggctgcag
cgcctgccggtgttcgaggcgtcgaccgggatcacgcggctggaaacggtccgcgtgtcg
cgggcatccgccgatcagcgggccggccgtgccggacgaacggaaccgggcatcgccgtc
aggctgtggcaccagggacagacggcggcactgccggccttcaccccgccgcagatcctt
tccagcgatctctcggggctggtgctcgacctcgcacattggggcgttcaagatccggca
tcccttgccttcgtcgatcagccgccggaaacgacgctgagggaagcgcgggtgctgctt
ggccagctcggcgccctcgacaaggacggagcgttgacagcgcgcggcaagatgatgcgc
gatctggctttgccgccgcggcttgccgccatggtcgtctcggcgggagaagcggggcag
gcccgggatgcggcgatgatcgccgtgcttctcaccgaacaggggcttggcggaacgagt
gtcgatattgaggaacggctgcgacgcttcaaggccgagcggggcgagagagcagaggcc
tcgcggcgactggcgggacggttggcgagcgggctcgacaggggtgcctcagcggcgccg
gcgcttgcaggccaattgctgctgcatgcgttcccggatcgaatcgcacttcagcgcggc
gggcgcggccgattcgtgatggcgaacgggcgcggagcagagttgccggaaaccgagagg
ctggccggcagccagatgctggtgatcgccgacctgaccggacgggcggcacaggcgcgg
gttctggcggcagccgaggtgacacgcggcgacatcgaagccgagttgcccggtgagatc
aaaaccggcgaccagatattcttcgaccgccagagccggcaaatccgggcgcggcgggca
acccggctcggcgcgatcgtcttcgaagagacgcccttgccgcgcccttccggggcagca
gtcacccaggcgctcgtggagggggtacgcgagctggggctcgatcagcttgtgttctcg
aaggacgccgtgcaactgcgcgagcggatcggattcctccacaggacgatcggcgagccc
tggcctgatgtcagcgatgatgccctgctttcccggctcgacgactggttcgcacccttc
cagacggaggcccgcggcctttcggagatttccgcagccgggctttcgaacggtctgatg
tcgctggtgccgcacgaattgcaacgcgaccttagccggcttgcgccaacccacttcgaa
gcgccgaccggccaaaggcatccgatccaatatgagggcgaggagccggtgctgacgatc
cgcgtgcaggagctgtttggactgaagcagcatccggccattgccggcggccgcctgccg
ctgctgctcgagctcacctcgccggcgcaccggccgatccagacgacacgcgacctgccg
ggcttctgggccggctcttggaaggatgtgcgtgccgatatgcgcgggcgctatccccgg
catccctggccggaacggccggaggatgcgttgccgacgacacgggcaaaaccgcgtggt
acatga
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