Rhizobium laguerreae: RlegWSM1455_24665
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Entry
RlegWSM1455_24665 CDS
T08814
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlw
Rhizobium laguerreae
Pathway
rlw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RlegWSM1455_24665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlw03400
]
RlegWSM1455_24665 (ligD)
Enzymes [BR:
rlw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RlegWSM1455_24665 (ligD)
DNA repair and recombination proteins [BR:
rlw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RlegWSM1455_24665 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
UFW67523
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All DBs
Position
pWSM1455_1:complement(140048..142693)
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AA seq
881 aa
AA seq
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MASDKLSTYRSKRDFQKTAEPSGEKRLTRSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRDRGKRTNWLLIKHHDEFSVDENGATILEEN
QTSVASGRTMEMIAAGKGRKPKPFMVEGGDVRADAVWDSNQGLAADERKEDARTGGDSKT
VTQVDLPDFIAPQLCQTLERPPAGTGWIHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YPDIAEAASALPDAIIDGEICALDDSGAPDFAALQAALSEGKTSELVYFAFDLLYEGGED
LRSLPLVERKARLQSLLSDAGSDPRIRFVEHFETGGDAVLRSACKLSLEGIISKQADAPY
QSGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETAKSPFTGVGAPKKEAEVTWLKPELVAEIEFAGWTSDGIVRQAAFKGLRE
DKPAKEVKAERPAKPARTDVPQPAVQAKARPVRRKSAKAEVMGVLISNPDKPLWPDANDG
EAVTKEELARYYEAVGSWLIEHIKGRPCSVIRAPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGLISFCKTTGGKGLHVVTPLAVNKRKPLSWAEAKGFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLAKSSAWEDYCDGQRPLEQAIKRFAKARVAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaaactatcgacttatcgatcgaagcgcgattttcaaaaaacggccgag
ccgagcggcgaaaagcgcctgacgcgcagcaaccgccgtcgcttcgtcatccagaaacat
gatgccacccggctgcactacgatctgagactcgagttggacggcgtcttcaagtcctgg
gctgtcacgaaagggccatccctcgatccgcacgacaagcggctggccgtcgaggtggag
gatcacccactggactatggtgatttcgaaggcaccattccgaaaggccagtatggcggc
ggcactgtcatgctgtgggatcggggctattgggaaccggaaggaaagaagagcccggag
caggcgctggcaaaaggcgatttcaagtttacgctggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcggatgcgcaacgatcgcgaccgtggcaagcgcaccaactggctgctg
atcaaacaccacgacgagttctccgtcgacgagaacggcgcgactatcctcgaagaaaat
cagacatcggttgcctccggccgaaccatggaaatgatcgcggccggcaaaggacgaaag
cccaagcctttcatggtcgagggcggcgatgttcgggccgatgcggtctgggacagcaat
cagggactggctgccgacgagagaaaagaggatgcccgaactggaggagactccaagacg
gtgacacaggtcgatttgccggatttcattgcgccgcagctctgccagaccctggagcgc
cctccggcaggcaccggctggattcacgagatcaagttcgacggttaccggatccagatg
cgcgtgctcgatggtgaggcgacgctgaagaccaggaaagggctcgactggactgcaaaa
tatcccgatatcgccgaggcggcatcggcattgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgatagtggcgctcctgatttcgcggccctgcaggctgccctttcggaa
ggcaagaccagcgaactcgtctatttcgccttcgatctactctatgagggaggggaggat
ttgcgatctctgccgctcgtcgagcgcaaggcgcggcttcaaagcctcctgtccgacgcc
ggcagcgatccgcgcattcgtttcgtcgaacatttcgagactggcggcgatgcagttctc
cggtctgcatgcaagctctcgctggaaggcatcatctccaaacaagcggatgcaccctat
caatccggccgtactgaaagctgggcgaagtcgaaatgccgcgccggccatgaggtggta
attggcgcctacgcaaagaccaacgggaaattccgatccctgctggtcggcgtctatcgt
ggcgaccacttcgtttatgtcggccgcgtcggcactggatatggcgcaaagaaagtcgaa
acgctgctgccgaagttgaaggcgctcgagacggcgaaatcgcctttcaccggtgtcggc
gcaccgaaaaaggaggccgaggtcacgtggctgaagcccgagctcgtggcggaaatcgaa
ttcgcaggatggacctcagacggtattgtccggcaggcggccttcaaggggctgagggaa
gacaagccggcgaaagaggtcaaggctgaacggccggcgaagcccgcgcgaactgacgtg
ccgcagccggcggtgcaggcgaaggccaggcccgtccgccgaaaaagcgccaaagccgag
gtcatgggggtgctgatttcaaacccggacaagccgctatggccggatgcgaatgacggc
gaagcggtcaccaaggaagagctggcccgctactacgaagccgtcggttcctggctgatc
gagcacatcaagggacgcccatgttcggtcatccgcgcacccgacgggatcggcggcgag
caatttttccagcgccatgcgatgcccggcacctcgaaccttctcgaactggtcaaggtc
ttcggcgataaaaagccctatctgcaaatcgaccgggtcgaaggcttggccgccgtcgcg
cagatcggcgcggtcgagctgcacccctggaattgcgaaccgcatcagcccgaggtgccc
gggcgtctcgtcttcgaccttgatccaggtccggacgtgccgttctccgctgtggtttcg
gcggcccgggaaatgcgggaccgtctcgacgcgctgggcctgatcagcttttgcaagacg
actggcggcaagggtctgcacgttgtcactccgctcgcggtcaacaagcgcaagccgctt
tcgtgggctgaagcgaagggttttgcgcacgatgtgtgccagcagatggcgcgcgacaat
cccgatctctatctgatcaaaatgacgaagagcctgaggaacggccggatcttcctcgac
tatctgcgcaacgaccggatggcgacggcggtggcgcctttgtcaccgcgcgcccggccg
ggcgccaccgtctcgatgccactgacctggacccaggtcaagtcggacctggaccccaag
cgcttcaccatccgcaccgttcctgctcttctggcgaaatcgtcggcctgggaagactat
tgcgacggccaacggccactggaacaggcgatcaagcgcttcgccaaggcgcgggtcgcg
gcttga
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