Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0078
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Entry
Rmag_0078 CDS
T00438
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03030
DNA replication
rma03410
Base excision repair
rma03420
Nucleotide excision repair
rma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmag_0078
03410 Base excision repair
Rmag_0078
03420 Nucleotide excision repair
Rmag_0078
03440 Homologous recombination
Rmag_0078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rma03032
]
Rmag_0078
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_0078
Enzymes [BR:
rma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rmag_0078
DNA replication proteins [BR:
rma03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rmag_0078
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Rmag_0078
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmag_0078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
CRAL_TRIO
PylC-like_N
Motif
Other DBs
NCBI-ProteinID:
ABL01878
UniProt:
A1AVC1
LinkDB
All DBs
Position
90999..93719
Genome browser
AA seq
906 aa
AA seq
DB search
MSHKLILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAIKRLQKQYPEAKIITIF
DAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEIIRAMGLHFMCVPDVEADDVIATLS
CYANQNNIKTIIASGDKDLMQLVSANISQLDMKGTVYDRQGVIEKMGVAPEIFLDLLALT
GDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQIKGKVGEKLRNNFYLLDLSRRLV
MLKFDVALPCNISDDESEQDVVKLADLYQQYGFSMWLKQLDNMPMLEQEGIQATEVTEST
SNMVDVLEDYSQTLVLDSDVFNAMVNRLKTSKTFVFDLETTSLDYMNATIVGWVFLVDKN
SFYVPVGHDYLNAPKQLDFKDVLDQLKLILEDVSIGKVGQNLKYDAHILANYQIDLQGIS
DDTMVKSYCLNSVATRHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLETAFPYAC
EYVIVTDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELSTQQIDI
VQQMKDIQAQVFELAGDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLL
DHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNI
PIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTAS
TMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDTYFDNYPGVL
HYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQGSSADIIKKS
MLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMANVYLLDIPLKVNVG
IGTSWQ
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcacataaactaattttaatggatggatcggcttttttattccgagcttatttttct
acactaaaacaaaacttaactaatcaagacggttttccaacaggcgctatatttggtgtt
attagtgccattaaacgtcttcaaaagcagtatccagaggctaagataatcactatattt
gacgctaaaggtaaaaattttagacacgatatttatccgcaatacaaagcacatagaaaa
ccagctgatagtgaactagtggttcaaattgaacctttgtatgagattattagagccatg
gggcttcattttatgtgtgtgcctgatgttgaagcggatgatgtgattgccaccttgagt
tgttacgctaatcaaaataatattaagaccattattgctagtggcgataaagatttaatg
caattagtgagtgctaatatttctcaattagacatgaaaggcactgtgtatgatcgtcaa
ggtgtgattgaaaaaatgggtgttgcaccggaaatttttttagatctcttagccttaact
ggtgatagtgcagataacgttcccggtgtgcctagtgttggccctaaaacagccattaaa
tggttacaaacttataatgacattgcgggtattaaagaaaatgcaacgcaaattaagggc
aaagtaggtgaaaagttacgtaataatttttatttgttggatttgtcccgacgattagtc
atgcttaaatttgatgttgccttgccttgtaatatttctgatgacgagtcagaacaagat
gttgtcaaactggctgatttatatcagcagtatggcttttctatgtggttaaagcagctg
gataatatgcctatgctagagcaagaaggcatccaagctactgaagtgactgaaagtact
agcaatatggttgatgttcttgaggattattcacagacattggtactagattcggatgta
tttaatgcaatggttaatcggcttaaaacctcaaagacatttgtgtttgatttagaaacc
acgtcgctagattatatgaatgctaccattgtcggctgggtatttttagttgataagaat
agtttttatgtgcctgttggtcatgattatttaaatgcaccaaagcagttagattttaag
gacgtacttgatcaattaaaactaattttagaagatgtgtctattggaaaagttgggcaa
aatctaaaatatgatgcacatatcttagctaattaccaaattgatttgcaaggcattagt
gatgacactatggtgaaatcttattgtttaaattcagttgccacaagacataatatagat
gatttgagtgaatattatttgaaccataaaaccatccattttgatgatattgcaggcaaa
ggtaaaaaacaaattacttttaatcaagtagatttagaaactgcctttccttatgcttgt
gaatacgtgatagtgacggatttgttaaatcacgtgttagatgaggagattgtccaatac
cctaaattggttaagttgtatcaaaacctagaattgccattgattaaagtcttgttgtgc
atggaacgtaatggtattgaattagacatgaacgaactaagcactcaacaaatagacatt
gttcaacaaatgaaggatattcaggctcaagtatttgagctggcaggtgatatatttaat
cttgagtcgcctaagcaaattcaacaaattttatttgaacctgaaggtttagggctgact
cctttgaaaaaaactcccaaaggcgcaccttctacgaacgaagaagcattaaaactttta
gaccatccattggttgatttaatattaagttatcgtacattaactaaacttaattccacg
tatcttgaagcattgcccaagcaaattgatttaaacacacatagacttcatacttcctat
catcaggcagtaactgtcacaggtcggctatcatcaagcaacccaaatttacaaaatatt
cccatccgctctaaacaaggtgcgcgtattcgtggtgcgtttgttgcaggtaaagataac
gttattattgctgctgattactcgcaaattgaactgcgaattatggcgcaattatcccaa
gataaaaatctattagatgcttttaatcatgataaagatgtgcacagtgtaacagcatca
accatgtttaatatgccaatcaatgaggtgacaaaaaaacatcgtaggcgatccaaggca
attaattttggcttgatttatggtatgagtgcttttggactgacaaaacaaattgatgtt
tccataattgaagcaaaacaatatattgatacttactttgataattatcctggtgtgtta
cactacatggatagcattaaagaaagcgcaaaagtatggggctatgttgaaaccgtcatg
ggtagacgtttgtatttgccacaaattaattccaagaataaaatattacaacaacacgcg
cttagaactgctattaatgcgcctatgcaaggctcttcagcagatatcattaaaaaatct
atgctagatattcacgcatggattggagaaaataacccagatattagaatgattatgcaa
gtacacgatgagttggtatttgaagtaagtgaatcaaaagccgatgaattcgcccataaa
atacaaggtctaatggcaaacgtctacttattagacattcctcttaaagtgaatgtgggg
attggcacttcttggcaataa
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