Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0103
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Entry
Rmag_0103 CDS
T00438
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma00300
Lysine biosynthesis
rma00470
D-Amino acid metabolism
rma01100
Metabolic pathways
rma01110
Biosynthesis of secondary metabolites
rma01120
Microbial metabolism in diverse environments
rma01230
Biosynthesis of amino acids
Module
rma_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Rmag_0103
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Rmag_0103
Enzymes [BR:
rma01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
Rmag_0103
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF1955
Motif
Other DBs
NCBI-ProteinID:
ABL01899
UniProt:
A1AVE2
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All DBs
Position
123511..124758
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AA seq
415 aa
AA seq
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MGFSYKNHILYAESVAITDLIDAYESPLYVYSRTDIENNWYEFDQAFGTHPHLVCYAVKA
NSNLAVLNVLSKIGSGFDIVSIGELERVLFAGADASRCVFSGVAKTKFEIKRALEVGIFC
FNVESMAEMNRIEQVAKDMGTQAQISLRINPNVDAKTHPYISTGLKENKFGVDIDDVVPI
YRMAHNSPYLAVKGLNCHIGSQLVEVSPFLDALDKVLELVAKLDKINIRITHLDLGGGIG
IKYNNEQIIDINAYIASILDKVKMNDLKIILEPGRAVVGNAGVFVTKVEFLKQNSDKSFA
IIDGAMNDLLRPAFYQTYHQVLPVNENAKGVDANWDLVGPICETGDFLAKNRKLSLSEGD
YLALMSTGAYGFTMSSNYNSRPRVAEVMVSGNQHTLVRERETIQDLFNKEHIIND
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
ttgggtttttcttataaaaatcacatactatatgctgaatctgttgctataacagattta
atagatgcttatgagtcaccactttatgtttattctcgtactgatattgagaataactgg
tatgaatttgaccaagcatttggcacacatccacatttagtttgctatgcggttaaagcc
aactctaatttagcagtacttaatgttttgtctaaaataggctctggttttgatattgta
tccattggtgaattagagcgtgttttatttgctggagcagatgcatctcgttgtgtattt
tcaggtgtagctaaaacaaagtttgaaattaaacgtgctttagaagtgggtattttttgc
tttaatgttgagtccatggcggagatgaatcgtattgagcaagtagcaaaagatatgggc
acgcaagcacaaatttcgctacgtattaatcctaatgttgatgcaaaaacacacccgtat
atttcaacaggacttaaagaaaataagtttggtgttgatattgatgacgtcgttcctatt
tatcgaatggcacataattcaccttatttagctgttaaagggctgaattgtcatattggt
tcacaattagtagaagtgtctccttttttagatgcgcttgataaagtgcttgaactagtt
gctaagcttgataagattaatattcgtattactcatttggatttaggtggtggtattggc
attaaatataacaacgaacaaataattgacattaatgcttatattgcctcaattcttgac
aaagtgaaaatgaatgatttaaaaattattttagaaccgggtcgggcagttgttggcaat
gccggtgtatttgttacaaaagttgaatttttaaagcaaaattcagacaagtcatttgca
attattgacggtgcaatgaatgatttattgaggcctgctttttatcaaacttatcatcaa
gtattgcctgttaatgaaaatgctaaaggtgttgatgccaattgggatttggtgggacca
atttgtgaaacgggtgattttttagctaaaaatagaaagctttctttatctgaaggggac
tatttagcactaatgtctactggtgcttatggctttaccatgagctcaaattataattct
cgtcctagagtagcggaagtaatggtatcaggcaatcaacatacactagtgcgagaacgc
gaaaccattcaagatttatttaacaaagagcatataattaatgattaa
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