Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0127
Help
Entry
Rmag_0127 CDS
T00438
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmag_0127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rma03019
]
Rmag_0127
Enzymes [BR:
rma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rmag_0127
Messenger RNA biogenesis [BR:
rma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmag_0127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABL01922
UniProt:
A1AVG5
LinkDB
All DBs
Position
147921..149225
Genome browser
AA seq
434 aa
AA seq
DB search
MDFSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPIL
EILSKCSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKL
RDGVDILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQ
TLMFSATFSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQWIHPVDKFKKQALLIYLIQE
HSWYQVLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVLVAT
DIAARGIDIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFDIER
LIQNKLDRIMVEGFVPEYNLPESGKKILSPKTKKNKNYNKLKYGKNRNSKKNKLNNKKGF
LDSKFNKKSTRKII
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcaaaattaggcttgtctgattcaattcttaaagccatagaacaacaagga
tacagagagccatcattaatacaagctcaagctattccagctattttagaaggcaaagat
gtcatggctgccgcccaaactggcacgggtaaaacagcaggatttatcctgcctattctt
gaaatattatcaaaatgtagtcctataaaattcaatcaggttcgtatgctaatcctaact
cctacgcgtgaattagccgcacaagtcagcgatagtgtaacgatttatggtaaatattta
tcgtttaaatcaagcgtggtgtttggaggtgtaaagattaatccacaaatgcgaaagtta
cgtgacggcgttgatattttagttgctacaccaggacggttattagatttatattctaaa
aatgcagtgaaatttgatacgttagaaatcattgtatttgatgaagcagatagaatgcta
gatatgggatttattcatgatattaaacgaattctaaagattttaccgcaaaaaaaacaa
acactcatgttttcagccactttttctaatgatattcgaatactagcaaagagtctggtt
aacaaccccgtagaaatatcagttactccgagaaattccactgttaaaactgtaaagcag
tggattcatcctgttgataaatttaaaaagcaagcgctattaatataccttattcaagaa
catagttggtatcaggtgctggtatttagccgcactaaacatggtgcaaatcgaattgct
actcaattagaaaagaaaaaaattagtgcaactgttattcatggcaacaaaagtcaaggt
gcacgcacaagagccttggcagattttaaaaatgctaaggtgaacgtgttagtagcaact
gatattgcagcaaggggtattgatattgaccaattgccacatgtcgttaactttgaccta
ccacgtgtgccagaagattatgtacatcgtattggtcgtactggtcgtgctggttcaaaa
ggtgaagcaatttcattagttagtgttgatgaagctaagcaattatttgatattgaacgt
ctcattcaaaataaattagatcgtataatggtagaaggatttgtgccagagtacaatttg
ccagaatctggtaaaaaaatattatcaccaaaaaccaaaaaaaataagaattataataag
cttaaatacggtaaaaataggaattctaaaaaaaacaaattaaacaataaaaaaggtttt
ttggatagtaagttcaataaaaaatccacaagaaaaataatatga
DBGET
integrated database retrieval system
