Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0190
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Entry
Rmag_0190 CDS
T00438
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rmag_0190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rma03021
]
Rmag_0190
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_0190
Enzymes [BR:
rma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rmag_0190
Transcription machinery [BR:
rma03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rmag_0190
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rmag_0190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ABL01982
UniProt:
A1AVM5
LinkDB
All DBs
Position
203855..204835
Genome browser
AA seq
326 aa
AA seq
DB search
MQGSARNFLKPKLVESSQTGVNEFKVILEPLERGFGHTLGNALRRTLLSSMTGSAVTEVA
IDGVMHEFSTIEGVQEDVLDILLNLKEVSVMLNTAETAQVVIEKKGPCEITVADIEANGI
DITAFNPDKVIATINDESHMRMTLKISTGIGYDTATSRTDEASSIGGMQLDASFSPIRRV
SFTVDAARVKQKVNLDKLNITIETNGSVNAEVAIKRAAIILQEQLSSFVELELVEEEEAL
PTSEDFDPQLLAAVDELELTVRSANCLKAEQIYYIGDLIQKSEQDLLRTPNLGRKSLNEI
KEVLTEKGLNLATSIENWPPVDLMSE
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtagtgcaagaaattttttaaaaccaaagctagttgagtcttctcaaactggt
gttaatgaattcaaggtaatccttgagcctcttgagcgagggtttggtcatactttggga
aacgccctaagaagaacgctgttatcttctatgacaggctctgctgtaactgaagttgct
attgatggggttatgcatgagttttctacaattgagggcgttcaagaagatgtattagat
attttacttaaccttaaagaggtgtcagttatgttaaatacagctgaaactgcgcaagtt
gttattgaaaaaaaaggtccgtgtgaaattacagtggctgatattgaggctaatggtatt
gatattacggcatttaatcctgataaggtgatagcaacaattaatgatgaaagtcatatg
cgtatgacacttaagattagtactggtattggttatgatactgccacttcacgtactgac
gaagcatcaagtattggtggtatgcagttagatgcaagtttttcacccattagacgtgtt
agttttacagtggatgcagcgcgtgttaagcagaaggttaatcttgataagttaaatatt
acgattgagactaatggctcggttaatgcagaagttgctattaaacgtgcagcaataatc
ttacaagaacaattatcttcattcgttgaattagagttggtagaagaagaagaagcattg
ccaacatcagaagattttgatccacaattgttagcagcagtagatgagttagaattaact
gtacgtagtgcgaactgcctaaaggcagaacaaatttactatattggtgatttgattcaa
aaatctgagcaagatctactaagaacgcctaatttaggtcgaaaatcacttaatgaaatt
aaagaagtgctaactgaaaaaggccttaacttagccaccagtattgaaaattggccacca
gttgatttaatgagtgaataa
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