Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0320
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Entry
Rmag_0320 CDS
T00438
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03420
Nucleotide excision repair
rma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmag_0320
03430 Mismatch repair
Rmag_0320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_0320
Enzymes [BR:
rma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmag_0320
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmag_0320
MMR (mismatch excision repair)
Other MMR factors
Rmag_0320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_11
ResIII
PAH
Motif
Other DBs
NCBI-ProteinID:
ABL02098
UniProt:
A1AVZ1
LinkDB
All DBs
Position
complement(347815..349971)
Genome browser
AA seq
718 aa
AA seq
DB search
MNLSEITNDLNDKQCQSVTFNNEKNALILAGAGSGKTRVLTHRIAYLITQKDIRIDAILA
VTFTNKAATEMRERLSTLLRRPIQSMWMGTFHSLAHRLLRTHYEKSKLTSGFQILDAQDQ
FRIVKRLMKENSIDESKFPIKKVQWFINNQKNEDIRAQDIDPDYNYFIKKNLEVFELYEA
YCQENDLIDFAELLIRSYELLKNNTDLLNHYQARFEHILVDEFQDTNTVQYKWIKLLFNG
HNKIFCVGDDDQSIYGWRGAKIENITKLCTDFTPIETIRLKQNYRSTGNILNASNALITH
NVNRMGKSLWTDAGNGELIDVYEARTETDEANYVISNIQKLITNGASPSDCSILYRFNAQ
SRIFEEALIKYNIPYIIYGGLKFFEYTEIKDALSYLRLIENSADNVAFERVVNFPTRGIG
NVTVKKIRTFAQDNHTSLFQAAIQISSILPTRAANALSSFINLIKQITDDTKHLNLSEKV
TNLLNTSGLIMHYSNDKIGSKKENLKKLITITKQYNHEQDNKMSEVMGFISLTSLDSSGN
TNASINQNVQLMTIHSAKGLEFPCVFLVGMEEDLFPSRQSKNEPHLTDEERRLCYVGMTR
AMKKLSLSYAIKRFLYGQSLYAYPSRFLNEIPSKYLNKIKAKFGATIQNYNDDNTFNKNI
TPKSDDQISIGALVKHAKFGLGTVLNFEGQGDSTRVQIKFKQVGTKWLINSYANLEFI
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatccgaaataacaaacgacctaaatgacaaacaatgccaatcagtcacattc
aataatgaaaaaaatgctttaatactagcaggtgcaggtagtggtaaaactagagtttta
acccatagaattgcctatttaattacacaaaaagatattcgtattgatgccattttagca
gttacttttaccaataaagctgctactgaaatgcgtgaaaggctaagtactttattaagg
cgccctattcaaagtatgtggatgggaacatttcatagcttggcacaccgattattacgc
actcattacgaaaagtctaagttgacttctggatttcaaattttagatgcacaagaccag
tttcgtattgtcaaacgtctaatgaaagaaaatagcattgatgaatctaagtttcccatt
aaaaaagtgcagtggtttattaataatcaaaaaaacgaagatattcgcgcacaagatatt
gaccctgattataactattttattaaaaaaaatcttgaagtgtttgaactttatgaagcg
tattgccaagaaaacgacttaattgattttgcagaactactgatacgtagttatgagttg
ttaaaaaataacacagacttgcttaatcattatcaagcgcgctttgagcatattttagtg
gatgagtttcaagataccaatacggtgcagtacaaatggattaaattattgtttaatggt
cataataaaatattttgtgtgggcgatgatgatcaatctatttatggatggcgcggtgca
aaaattgaaaatattaccaaactatgcacagactttactcccattgaaaccatccgctta
aaacaaaattatcgttcaactggtaatattctaaacgcctctaatgccttgattactcat
aacgtcaatcgtatgggtaaatctctttggactgatgctggtaatggtgaattgattgat
gtctatgaagcgcgaactgaaacggatgaggcgaactatgttatcagcaatattcaaaaa
ttaatcactaatggtgcatcgcccagtgattgctctattttgtaccgatttaatgctcaa
tctcgtatctttgaagaggcactaataaaatacaatattccttatattatctatggtggt
ttaaaattttttgagtataccgagattaaagacgctttaagttatttacgtttaatagag
aactcggctgataatgttgcctttgaacgcgtagttaattttccaactcgcggtattggc
aatgtaacggttaaaaaaatacgtacatttgcacaagacaaccacaccagtctttttcaa
gcagccatacaaatatcatccatcctgccaactcgcgctgccaatgcattaagtagcttt
attaatctaattaagcaaataacagacgacacaaagcacctaaatttatctgaaaaagta
actaacttgcttaatacatcaggattaattatgcattattctaatgataaaatcggcagt
aaaaaagaaaatctaaaaaagttaatcaccataacgaaacaatacaaccatgaacaagat
aataagatgagcgaagttatgggatttatttctttaacatcgctagattctagtggcaat
accaatgcgtctattaaccaaaatgtacaactcatgactatacattcagctaaaggtcta
gagtttccctgtgtatttttggttggcatggaagaagacctattcccttctagacaaagt
aagaatgaacctcatttaacggatgaagaaagacgattatgctacgtgggtatgactcgc
gctatgaaaaaactatcactctcttatgccattaaacgctttttgtacggacaatcttta
tacgcttatccttcacgttttttaaacgaaattccaagtaaatatttaaataagattaaa
gctaaatttggtgcaacaatacagaattacaatgatgacaatacttttaataaaaatatt
acaccaaaatctgatgaccaaatatctattggcgctttggttaaacatgccaaatttgga
ttaggtacagtgctaaattttgaagggcaaggcgattctactagagtgcaaataaaattt
aagcaagtgggtacaaaatggctgattaattcatatgctaatttagaatttatttaa
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