Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0332
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Entry
Rmag_0332 CDS
T00438
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rmag_0332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_0332
Enzymes [BR:
rma01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rmag_0332
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rmag_0332
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rmag_0332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABL02109
UniProt:
A1AW02
LinkDB
All DBs
Position
complement(357580..358389)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVEITKRGLVPLIINQEVSRVILHRENLRWAIPKNLITILANQKIKTIKRRAKYL
LIKFEAGTLIIHLGMSGSIKVVDIKTPLLKHEHFELQFNNGTSMRLNDPRRFGAVLFSKD
GSHKLLDSLGVEPLEAVFNNGYLYQKSRNKRKNIKDFIMDSKIVVGVGNIYACESLFMAS
INPQRKAGNVSKTRYKILTQCIKDILTQAIKAGGTTLQDFSQVDGNPGYFTQTLSVYGCE
NKTCHFCKSKIIKIVQNQRSTFYCRKCQT
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttccagaagtagaaatcactaaacgtgggcttgtacctttaattatcaat
caagaagtgagccgagtaatactacatagagaaaatttgcgttgggctatacctaaaaat
ttaataacaatattggctaatcaaaaaattaagacaattaagcgtcgtgctaaatactta
ttgattaaatttgaggcgggtacgttaattatccatttaggtatgagtggctcaattaag
gtggttgatattaaaacaccactactcaagcatgaacattttgaattacaatttaacaat
ggtacaagtatgcgcttgaatgacccgagacgttttggtgcagtgctgttttcaaaagat
ggatcgcacaaattactagactcattaggggttgagcccttggaagcggtatttaataat
gggtatttatatcaaaaatcacgaaacaaacggaaaaatatcaaggattttattatggat
agtaaaatcgtagttggtgttggtaatatctatgcttgtgagagtttgtttatggcgagt
attaatccgcaacgtaaagcaggtaacgtgtctaagactcgatataaaatcttgactcaa
tgtattaaggatattttgactcaggccattaaagcaggcggcacaaccttgcaagatttt
tctcaagttgatggtaatcctggatatttcacacagactttgtctgtgtatggttgtgaa
aataaaacatgtcatttttgcaagagtaaaataattaaaattgtacaaaaccaacgatcc
acattctattgtagaaaatgtcagacttag
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