Candidatus Ruthia magnifica (Calyptogena magnifica): Rmag_0946
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Entry
Rmag_0946 CDS
T00438
Name
(GenBank) Exodeoxyribonuclease I subunit C
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rma
Candidatus Ruthia magnifica (Calyptogena magnifica)
Pathway
rma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Rmag_0946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rma03400
]
Rmag_0946
Enzymes [BR:
rma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Rmag_0946
DNA repair and recombination proteins [BR:
rma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Rmag_0946
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Rmag_0946
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmag_0946
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ABL02655
UniProt:
A1AXJ8
LinkDB
All DBs
Position
1008296..1009711
Genome browser
AA seq
471 aa
AA seq
DB search
MKTFYWYDYETFGISPKIDRISQFAGIRTDENFNIIDEQMFYCKPTNDCLPSPEACFITG
ISPQLCEQKGMIEHEFIKKIHAQFSTSNTCIVGYNSIRFDDEFTRHTLYRNFIDPYTWHW
QNGNTRWDILNVVRLCYALKKDTSLKWVYDKQGNPVFKLDQLSLANDIEHANAHDALADV
HATIAIAKIIKQTQPQLFNYSFSLREKKTVASKISLFEPMLHTTDMHPAQLSCTRLSVAL
AYHPEYNDRVLMFNLDQDPCVLLELDIEALKTLTFTKQSELSKEVERLQIKELIFNKSPM
FVPNIYKLEPKIIKQLNIDMNQCMQHLSFIKDNQLKIGKIVQDLYKNDQKHIALKEVDQS
LYDGFIDNTDKRICNQIQALSVHKLKEFHPKFKDEKLSRLFMHFKARNYPNTLTENEKED
WFEIVQGRIQTNQNGYITIDDYLQKINTMRTQHPHQEKLWQQLEAYSKLFF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattttattggtacgactatgaaacttttggtatttcgccaaaaatagacaga
atctctcaatttgctggcatcaggactgatgaaaattttaatattatagatgagcaaatg
ttttactgcaaaccaactaatgattgtttgccatctcctgaggcttgttttataactggt
attagcccacaattatgtgaacaaaaaggcatgattgagcatgaatttattaaaaaaatt
catgctcaattttcaacatcaaatacatgcattgtgggttacaattcaattcgttttgat
gatgagtttactcgtcatacactgtatcgtaattttatagacccttatacttggcattgg
caaaatggtaatactcgttgggatatattaaatgttgtgcgactatgttatgcgctaaaa
aaagacacaagccttaaatgggtgtatgataaacaaggcaatccagtatttaaacttgat
caattatcacttgctaatgacattgaacatgcaaatgcacatgatgccctagctgatgtt
catgccactattgctattgctaaaattatcaaacaaacacaacctcagttatttaactac
agttttagtttaagagaaaagaaaacagtcgcctctaaaattagtctatttgagccaatg
ttacatacaactgatatgcatccagcacaattgtcttgtactcgattgtctgttgcgctg
gcttatcatcctgagtataacgatcgagttcttatgtttaaccttgatcaagatccttgt
gttttgttagagctcgacattgaagcgcttaaaactttaacgtttaccaaacaatctgaa
ttatcaaaagaagtggaaagactacaaatcaaagaacttatttttaataaaagtccaatg
ttcgttcccaatatttataaacttgaaccaaaaattattaagcagttaaatattgacatg
aatcaatgcatgcagcatctttcttttatcaaagacaaccaacttaaaattggtaaaatc
gtgcaagatttatacaaaaacgatcaaaaacatattgcgctaaaagaagtagaccaatca
ctttatgatggttttattgataatactgataagcgtatttgtaatcaaattcaagcctta
tccgttcataaattaaaagaatttcatccaaaatttaaagatgagaagctctcaagatta
ttcatgcattttaaagctagaaattaccccaatactttaactgaaaacgaaaaagaagat
tggtttgaaatcgttcaagggcggattcaaacgaatcaaaatggttacataactattgat
gattaccttcaaaaaatcaacacaatgagaacgcaacatccacatcaagaaaaactatgg
cagcagcttgaggcttatagtaaattgttcttttag
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