Roseicyclus marinus: MACH21_29170
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Entry
MACH21_29170 CDS
T09703
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmai
Roseicyclus marinus
Pathway
rmai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MACH21_29170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmai03021
]
MACH21_29170 (rpoC)
03400 DNA repair and recombination proteins [BR:
rmai03400
]
MACH21_29170 (rpoC)
Enzymes [BR:
rmai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MACH21_29170 (rpoC)
Transcription machinery [BR:
rmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MACH21_29170 (rpoC)
DNA repair and recombination proteins [BR:
rmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MACH21_29170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
BDW86740
UniProt:
A0AA48HFF8
LinkDB
All DBs
Position
complement(3032526..3036755)
Genome browser
AA seq
1409 aa
AA seq
DB search
MNQELTNNPFNPLTPPKAFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLLTEEEFLDAQDAYGADAFS
ANIGAEAIREMLANIDLEAEAANLREELKEATGELKPKKIIKRLKIVENFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMKGEGMVFANVDEVRHAL
DAGEVHLHSKVKARVKQIDEEGNEVWKRYDTTPGRVLLGDLLPLNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMGMGFKEAFKAGISFGKDDMVIPETKWTLVEETRD
QVKEFEQQYMDGLITQGEKYNKVIDAWSKANDKVTDAMMATISAPKKDETGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRLDDCGTENTITAEAAVNDGEVVASLAERILGRT
AGEDICVPGTDEVIVAKGELIDERKADAVEAAGVQSTLIRSPLTCEAEEGVCATCYGRDL
ARGTKVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEANVEGKVTFANPN
LLANPAGEQVVMGRNMQLVLTDDQGTERASFKLGYGTKVHVQEGAQVKRGDRLFEWDPYT
LPIIAEKTGTVKYVDLVSGIAVREETDDATGMTQKIVADWRTAPKGNELKPEILIVGEDG
EPVRNDAGNPVTYPMSVDAILSVEDGQTIQAGEVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVKFGRDFKNKRRITIVPTDESLEPVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALAVYMINEVQEVYRLQGVKINDKHIEVIVRQMLQKWE
ILESGETTLLKGEHVDKAELDAVNAKAEADGRRPAEGQPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQNVERIAKTRDLSVIEAARA
EAEAAAALAAPVVEDAPAETADAEEGPAE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgttcaacccgctgaccccgcccaaggctttcgat
gagatcaaggtctctctggcgagccccgagcgcatcctcagctggtccttcggcgagatc
aagaagcccgagacgatcaactaccggaccttcaagcccgagcgcgacggcctgttctgc
gcccgcatcttcgggccgatcaaggattacgaatgcttgtgcggcaagtacaagcggatg
aagtatcgcggcgtcgtctgcgaaaagtgcggcgtggaagtgaccctgcaaaaggtccgc
cgcgagcgcatgggccatatcgaactggccgcgcccgtcgcccacatctggttcctcaag
tcgctgcccagccggatcggcctgatgctcgacatgacgctgcgtgacctggaacgcatc
ctctatttcgagaattacgtggtgatcgagccgggtctgaccgatctgagctatggccag
ctcctgaccgaggaagaattcctcgatgcgcaggacgcctatggcgcggatgcgttcagc
gccaatatcggggccgaagcgatccgcgagatgctggcgaacatcgacctcgaggccgaa
gccgccaacctgcgcgaagagctcaaggaagccaccggcgaactgaagcccaagaagatc
atcaagcggctcaagatcgtcgagaatttcctcgaatccggcaaccgcccggaatggatg
gttctgaccgtcattcccgtgatcccgccggaactgcgcccgctggtgccgctggatggc
ggccggttcgcgacctcggatctcaacgacctctatcgccgggtcatcaaccgcaacaac
cgtctcaagcggctgatcgaattgcgcgcgcccgacatcatcatccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcacg
ggggccaacaagcgcccgctgaagtcgctgtcggacatgctcaagggcaagcagggccgg
ttccgtcagaaccttctcggcaagcgcgtcgacttttccggccgttcggtcatcgtgacc
ggcccggaactgaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttc
aagccgttcatctactcgcggctcgaggccaaggggctttcgagcaccgtcaagcaggcc
aagaagctggtggaaaaggaacgtcccgaggtctgggacatcctggacgaggtgatccgc
gagcatccggttctgttgaaccgcgcgccgacgctgcaccgtctgggcatccaggccttc
gagccgatcctgatcgaaggcaaggcgatccagctgcacccgctggtctgttcggccttc
aacgccgacttcgacggtgaccagatggctgttcacgttccgctgagcctcgaggcccag
ctggaagcgcgcgtgctgatgatgtcgacgaacaacgttctgtcgcccgccaacggcgcc
ccgatcatcgttccgtcgcaggacatgatccttggcctttactatgtcacgctggaacgc
gagggcatgaagggcgaaggcatggtctttgccaatgtggacgaagtgcgccatgcgctc
gacgcgggcgaggtgcatctgcactccaaggtcaaggcgcgcgtcaagcagatcgacgag
gaaggcaacgaggtctggaagcggtatgacaccacgcccggccgcgttcttttgggcgat
ctgttgccgctgaacgccaaggcgccgttcgagctggtcaaccgtctgctccgcaagaag
gaagtgcagcaggtcatcgacaccgtctaccgctactgcggtcagaaggaatcggtcatc
ttctgcgaccagatcatgggcatgggcttcaaggaagcgttcaaggccgggatctccttc
ggcaaggacgacatggtcattcccgaaaccaagtggacgctggtcgaagagacccgcgac
caggtcaaggaattcgaacagcagtacatggacggcctgatcacccagggcgaaaagtac
aacaaggtaatcgacgcctggtccaaggccaacgacaaggtcacggacgccatgatggcc
acgatctcggcccccaagaaggacgagaccggcgccgagatggaaccgaactcggtctac
atgatggcgcattccggtgcgcggggttcggtcacgcagatgaagcagctcggcgggatg
cgcggcctgatggccaagccgagcggagagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgcaagggtctg
tcggataccgcgctcaagaccgcgaactcgggctatctgacccgtcgtctggtcgacgtg
gcgcaggattgcatcgtgcgtctggacgattgcggcaccgagaacacgatcaccgccgag
gcggccgtgaacgacggtgaagtggtcgcgtcgctcgccgagcgcatcctgggccgcacc
gcgggcgaggatatctgcgtgcccggcaccgacgaggtgatcgtcgccaagggcgagctg
atcgacgaacgcaaggccgatgccgtggaagcggcaggcgtgcaatcgacgctgatccgc
agcccgctgacctgcgaggctgaagagggcgtctgcgcgacctgctatggccgcgacctg
gcgcgcgggaccaaggtgaacaccggcgaggccgtcggcatcatcgcggcccagtcgatc
ggggaacccggcacgcagctgacgatgcggaccttccacatcggcggcgttgcccagggt
ggccagcagtccttccaggaggcgaatgtcgagggcaaggtgacctttgccaacccgaac
cttctggcgaacccggcgggcgagcaggtggtgatgggccgcaacatgcagctcgtcctg
accgacgaccagggcaccgagcgcgccagcttcaagctgggctacggcaccaaggtccac
gttcaggaaggcgcgcaggtcaagcgcggcgaccgtctgttcgaatgggacccctatacc
ctgccgatcatcgcggaaaagaccgggacggtgaaatacgtcgatctcgtcagcggcatc
gccgtgcgcgaggaaaccgacgatgccaccggcatgacccagaagatcgtggccgattgg
cgcaccgcgcccaagggcaacgagctcaagcccgagatcctgatcgtgggcgaagatggc
gagccggtccgcaacgatgcgggcaacccggtgacctatccgatgtcggtggacgcgatc
ctttcggtcgaggatggccagaccatccaggccggcgaggtcgtggcgcgtatcccgcgc
gagggtgccaagaccaaggacatcaccgggggtctgccccgcgtggcggaattgttcgaa
gctcgtcgtcccaaggatcacgcgatcatcgcggagatcgatggttatgtgaaattcggc
cgcgacttcaagaacaagcgccggatcaccatcgttccgaccgacgagagcctggagccc
gtggaatacatggtgcccaagggcaagcacatcccggtggccgagggcgatttcgtccag
aagggcgattacatcatggacggcaaccccgcgccgcatgacatccttgcgatcatgggt
gtcgaggcgctggcggtctacatgatcaacgaggtgcaggaggtctatcgtctgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatgctccagaagtgggag
atcctcgagagcggggaaaccacgctcctcaagggcgagcatgtggacaaggcggaactg
gatgccgtcaacgccaaggcggaggccgatggccgtcgtccggccgaggggcagccgatc
ctgctggggatcaccaaggcaagcttgcagacccgcagcttcatctcggcggcgtccttc
caggaaaccacccgcgtgctcaccgaagcctcggtccagggcaagcgcgacaagctggtg
ggtctcaaggagaacgtcatcgtcggccgcctgatcccggcgggcaccggtggcgcgacc
cagaacgtggagcggatcgccaagacgcgcgacctgtccgtgatcgaggccgcccgcgcc
gaggccgaagcggccgcagccctggccgccccggtggtcgaggatgcaccggccgaaacc
gcggatgcggaggaaggcccggcggagtga
DBGET
integrated database retrieval system
