Rubrobacter marinus: GBA65_13715
Help
Entry
GBA65_13715 CDS
T07670
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmar
Rubrobacter marinus
Pathway
rmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GBA65_13715 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmar03400
]
GBA65_13715 (mfd)
Enzymes [BR:
rmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GBA65_13715 (mfd)
DNA repair and recombination proteins [BR:
rmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GBA65_13715 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
UB2H
AAA_19
AAA_22
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIN79394
UniProt:
A0A6G8PYR7
LinkDB
All DBs
Position
complement(2710459..2713638)
Genome browser
AA seq
1059 aa
AA seq
DB search
MQDRVTATDLQAPRRIRAYLAATSGRPVLLLAGSEEAAERYASDARSFTDETVVHLPSRG
VPYGDVFAPPVGRVGERQRALHALSGARILVAGPAAFAEKTPLYDPLKLQEGTEIELDDC
LSRLVALGYERVDRVSRHGEFAVRGGIVDVFPSTRRSPVRVEWWGDEVESVRAVSLATQR
VVRELEGASIFAAREGDLAALAAASDEDYGEEARMGVRTPGLDRLLLDLDPVSPGDLLPE
GMEVWSEEPVEGPSEDAEVVGELYDWERPAPDTRFVSTADDEEGAAEVVSAPPVVAHSTT
LRESSRRLEAFVEEGLRVFIACGSVGEAKRTAYAFGEIGRTVRDVERVDAALPPGLYAVP
GEVAESFSYPDGGVAVVRRDALLGRRKTRAQKTKSPSVSSFADLKAGDLVVHSTQGIGRF
GGLVSRIVLGATRDYMQVDYRGGDTLYVPYEQMELLHKYVGGEGTRLDKLGGGTWAAVTD
KVRRRVKALAGELLRVQAARAAARGFAFPEDSEWERELEESFPYQETPDQAAAIAAVKAD
MQAARPMDRLVCGDVGFGKTEVAVRAAFKAALAGKQVLVLAPTTILVQQHAKTFRERLGR
FAVRVESLSRFSTTAERKQTLKDLQSGEVDILIGTHALLGAEVRPKDLGLVVVDEEQRFG
VKHKERLKEFKASVDLLTLTATPIPRTMQMGLAALRDISVIETPPTGRRSILTHVGPEED
ELVKRAIEKEVRRSGQVFFVHNRVDSLEEVAEKLGDLVPGVSFVTAHGQMTERQLEDSMR
RFLDREADVLVTTTIVESGLDVATANTLIVDRADMMGLSQLYQLRGRIGRSAAQAYAYLF
APVGATPESQKRLEALMDFTELGSGFAVAMRDLEIRGAGNLLGAEQSGQIAAVGFEMYLR
LLEEAVALAKGQPVEEEEPQPVIVELGLDAYLPVDYVRDEIERVDLYRRASGVRSTAELD
DLAEELNERFGEPPEPALNLLGLSRVKLLARRVGATSVNFRSGALNVTGATAGAAAPALV
RRATGGTVGGREGRVTLRGSSLPPLELAEETLRALDKAA
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggatcgagttaccgcaacagacctacaagccccccgcaggatccgcgcttatctc
gccgcgacgtccgggcgtcccgtgctgctcctcgccgggagcgaggaggccgccgagcgg
tacgcgagcgacgcgcgctccttcacggacgagaccgtagtacacctcccctcgcgcggc
gtcccttacggcgacgtcttcgccccgccggtcgggcgcgtcggcgagcggcagcgggcg
ctgcacgcgctctcgggggcccggatcctggtcgcggggcctgcggcgttcgcggagaag
acgccgttatacgacccgctcaagttgcaagaaggcaccgagatcgagctcgacgactgc
ctctcgcggctcgtggcgctcgggtacgagcgggtggacagggtcagcaggcacggcgag
ttcgcggtgcgcggcgggatcgtggacgtcttcccgagcacccgccgctcgccggtgcgc
gtcgagtggtggggggacgaggtcgagagcgtgcgggccgtctcgctcgcgacgcagagg
gtggtgcgggagctcgagggggcttcgatcttcgcggcccgcgagggcgacctggccgcc
ctcgccgcggcgagcgacgaggactacggggaggaggcgcgcatgggcgtgcggacgccc
ggcctggaccgtctgctcctcgacctcgacccggtctcgcccggggacctcctgccggag
gggatggaggtctggtcggaggagcccgtggaggggccttcggaggacgccgaagtcgtc
ggggagctctacgactgggagcgcccggcgcccgacacgcgcttcgtctcgacggcggac
gacgaggaaggagcggcggaggtagtctcggcgccgcccgtggtggcgcactccaccacc
ttgcgggagtcgagccggaggctggaggctttcgtcgaggaggggctgcgggtctttatc
gcgtgcggctccgtcggcgaggccaagcggacggcctacgcgttcggcgagatcggacgg
accgtgagggacgtcgagcgggtcgacgcggcgctgccgcccggcctctacgccgtcccc
ggcgaggtcgcggagtccttctcctacccggacgggggcgtggcggtcgtccgccgggac
gccctgctcgggcggcgcaagacccgggcccagaagacgaagtcgccctcggtctcctcg
ttcgccgacctcaaggccggcgacctcgtcgtgcattcgacgcaggggatcggccgtttc
ggggggctcgtctccaggatcgtcctcggagcgacgcgcgactacatgcaggtggactac
cggggcggcgacacgctctacgtcccgtacgagcagatggagctcctgcacaagtacgtc
ggcggcgaggggacgcgcctcgacaagctcggcggcgggacgtgggccgcggtcacggac
aaggtccgaaggcgcgtcaaggcgctcgccggggagctcttgcgggtgcaggcggcgcgc
gccgccgccaggggcttcgccttccccgaggactccgagtgggagcgcgagctcgaggag
agcttcccctaccaggagaccccggatcaggccgccgcgatcgccgcggtcaaggcggat
atgcaggccgccagaccgatggaccgtctggtttgcggcgacgtcggcttcggcaagacc
gaggtcgcggtgcgcgccgcgttcaaggccgcgctcgccggcaagcaggtcctggtgctc
gccccgacgaccatcctcgtccagcagcacgccaagaccttccgggagcgcctgggccgg
ttcgccgtaagggtcgagagcctcagccgcttctcgacgacggccgagcggaagcagacc
ctgaaggacctccagtccggcgaggtggacatactcatagggacgcacgccctgctcggc
gcggaggtccggccgaaggacctcgggctcgtcgtcgtcgacgaggagcagcgcttcggg
gtgaagcacaaggagcgcctgaaagaattcaaggcctccgtggacctgttgacgctgacg
gcgacccccataccgcgcaccatgcagatggggctcgcggcgctgagggacatcagcgtc
atcgagacgccgccgacggggcggcggagcatcctcacgcacgtcgggccggaggaagac
gagctcgtgaagcgggcgatcgagaaggaggtccgccggagcgggcaggtcttcttcgtc
cacaaccgcgtcgactcgctcgaggaggtggcggagaagctcggggacctcgtgccgggg
gtgagcttcgtgacggcgcacgggcagatgaccgagcgccagctcgaggactcgatgcgc
cgcttcctcgaccgggaggccgatgtcctcgtcacgacgaccatcgtcgagagcgggctc
gacgtggcgacggcgaacacgctgatcgtggaccgggccgacatgatgggcctcagccag
ctctaccagcttcgcggcaggatcgggcgctccgcggcccaggcctacgcgtacctcttc
gccccggtgggggcgacgccggagtcgcagaagcgcctggaggcgctgatggacttcacg
gagctcggcagcgggttcgccgtcgccatgcgcgacctcgagatccggggcgccgggaac
ctcctcggggcggagcagagcggccagatcgccgcggtcggcttcgagatgtacctgagg
ctcctggaggaggcggtcgcgctcgcgaagggccagcccgtggaggaggaggagccgcag
ccggtgatcgtggagctcgggctcgacgcctacctccccgtggattacgtgcgcgacgag
atcgaacgggtcgacctctaccgccgcgcctccggcgtgcgctcgaccgccgagctcgac
gacctcgccgaggagctgaacgagcgcttcggcgagccccccgagcccgccctgaacctc
ctcggcctctcccgcgtgaagcttctcgcccgcagggtgggcgcgacgtccgtgaacttc
cgctccggcgccctcaacgtcaccggggcgaccgcgggtgctgcggcccccgccctcgtc
cgaagggcgaccggtgggacggtcggaggccgggagggccgcgtcaccctgcgcggctcc
tcgctcccgccgttggagctcgccgaggagacgctgagggcgctcgataaggctgcttaa
DBGET
integrated database retrieval system
