Rhopalosiphum maidis (corn leaf aphid): 113548048
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Entry
113548048 CDS
T06065
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113548048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113548048
Enzymes [BR:
rmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113548048
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113548048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
MMR_HSR1
ATP_bind_1
AAA_22
RsgA_GTPase
TniB
AAA_29
Motif
Other DBs
NCBI-GeneID:
113548048
NCBI-ProteinID:
XP_026804503
LinkDB
All DBs
Position
1:complement(67217995..67222825)
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AA seq
430 aa
AA seq
DB search
MSESVEVQIEDQEFQLEPDNELRFEVENKNETVVLELKTGLAEIFGTELVKGKSYTFYFG
AKIAVFTWQGCSLKLRGKKGISYISKETPMMFYLNCHASLEQLRVKSEKEKVRGPVTMVV
GPTDVGKSTLCRILLNYSARMNSLGRRPIYVDLDPGQGQISVPGTIGAVMVERPAEVEES
FSQAAPLVYHYGHTNMSINSTLYNTLVSRMAEVIHQRMEDNPRINCSGLIINTCGWVKGK
GYQHLTHIALAFEVEVILVLDQERLYNELVRDMPTFVKVVLLPKSGGVVERSNKFRLEGR
EARIREFFYGSPRNVLHPHTCEVRFSDIKVYRIGAPPIPNTLMPLDMQKTDLETKLEPVT
PGPNMMHHILALSFSTTVEEDVVRTSVAGFVCVTNVDTSRQMLTLLSPQPKPLPETIYLM
SDVQFMDNNA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagagcgtagaggttcaaattgaagatcaggagttccaattggaacctgacaat
gaacttcgatttgaagtcgaaaacaaaaacgaaacagttgtattagaattgaaaactggg
ctagctgaaatttttggaacagaattagtaaaaggtaaatcgtatacattttattttgga
gcaaaaattgcggtgttcacatggcaaggatgttcattaaagttacgaggaaaaaaagga
attagttatatatctaaagagacaccaatgatgttttatttaaattgccatgcgtcatta
gaacaactacgagtaaaatcagaaaaagaaaaggttagaggtcctgttacaatggtagtt
ggaccgactgatgtgggtaaatctactctctgtagaatactactaaactatagtgcacgg
atgaattctcttggccgtagacccatctatgtagacttggacccaggtcagggacaaata
tcagttccaggaacaattggagcagtcatggttgaaaggccagctgaagtagaagaaagt
ttctcccaagcagctccactagtttatcattatggacatacaaacatgagtattaattca
acgctatacaacactttagtatctcgtatggcagaagttattcatcaacgaatggaggat
aatcctagaattaactgttctggattaataattaacacatgtggttgggtaaaaggcaaa
ggttaccagcatttgactcatattgcacttgcttttgaagttgaagttattcttgtgcta
gatcaagaacgattatataatgaactagtaagagatatgccaacatttgtcaaagttgta
cttttaccaaaaagtggtggagtagttgaaagaagtaacaaatttaggttggaaggtaga
gaggcacgtattcgagaattcttttacggtagtcctaggaatgtacttcatccacacacc
tgtgaagtaaggttttccgatataaaagtatatagaattggagcgccgcccattccaaat
acgttgatgccattagacatgcaaaaaactgatttagagacaaaacttgaacctgttact
cctggaccaaatatgatgcatcatatattagctctcagtttcagtacaactgtagaagaa
gacgttgttagaactagtgtggcaggttttgtctgtgtaacaaatgttgatacctcacga
caaatgttaactcttttatcacctcaaccaaaacctctgcctgaaacaatttatctcatg
tcagatgtacagttcatggacaataatgcttaa
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