Rhopalosiphum maidis (corn leaf aphid): 113548231
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Entry
113548231 CDS
T06065
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113548231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113548231
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113548231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
CSTF1_dimer
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_Aladin
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_RFWD3
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_SCAP
eIF2A
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_IFT122_1st
VPS8_N
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
Beta-prop_WDR11_1st
Mcl1_mid
DUF5899
Motif
Other DBs
NCBI-GeneID:
113548231
NCBI-ProteinID:
XP_026804806
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Position
4:complement(33045898..33047981)
Genome browser
AA seq
438 aa
AA seq
DB search
MRSEVNNAKPEMCIKNRDHLYRLIISQLFYDGHSTIASSLAAQVNVDPPCSPSDRLMSVV
TKGLQHETDRQKESEQALNLNPIQQMLIGPGIDLEFETNVSCTAPEPSLYETVYVTSHKG
ACRAGAFSPDGQLIATGSSDASIKILDVERMLAKAHDIGSTDNQEGQGHPVIRTLYDHLE
EVTCLEFHPNKPILASGSRDCHVKLFDYSKTSVKKAFKTINDVEPITCISFHPIGDFIVM
GTNSPIIRLYDINTVQCYVCSLPSHQHTGPVTSIKYEPSARYFVSSSRDGSIKLWDAVSN
KCVNTFEKAHDGSQVCSVTFSRNGKYILSSGKDSLVKLWELSTSRCLIAYTGAGTTGKQE
HRTQALFNHTEEYVMFPDEATTSLCAWNARNASRQQLLSLGHNGPIRSIVHSPNSAAFLT
CSDDFRARFWYRKHLIGA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgaagtaaataatgcgaaacctgaaatgtgcattaagaatagagatcattta
tacagactcataataagtcaactattttatgatggccattccacaattgcatccagctta
gctgcccaggtcaacgttgatccaccttgttctccatcagatcgactcatgagtgtagtg
acaaaaggtttacaacacgaaactgatagacaaaaagaatctgaacaagcattaaactta
aatccaattcaacaaatgttaattggaccgggcattgatttggaatttgagactaatgtt
agttgtactgctcctgaaccgtcactttatgaaactgtatatgtaacatcccataaaggc
gcctgtagggctggtgctttcagtcctgacggacagttaatcgctacaggaagcagtgat
gcatctatcaaaattttagatgttgaaagaatgctggctaaagcacatgatattggtagt
actgataaccaagaaggacagggacatccagtaattcgaaccttatatgatcatttagaa
gaagtgacgtgcttggagttccacccaaataagccaattttggcttcaggctctcgagat
tgtcatgttaaactttttgattattctaaaacatctgtgaagaaagcctttaagacaata
aacgatgttgaacctataacatgtataagttttcatcccattggagacttcatagtaatg
ggcaccaacagccctatcataaggctttatgatataaatacagttcaatgttatgtttgt
tcacttcctagccatcaacatactggccctgttacatcaataaagtatgaaccaagtgcc
agatactttgtgtcttctagtcgagatggatcaattaagctgtgggacgctgtatctaat
aaatgtgttaacacattcgaaaaagcacacgatggtagtcaagtatgttctgtgacattt
tcaagaaatggaaagtacatcttatcatcaggtaaagattctttagtaaaactttgggaa
ttgtccactagcagatgtctgattgcatatactggagctggaaccactggcaaacaagaa
caccgtacacaagcattgtttaatcatactgaagagtatgtcatgtttccagatgaagcc
actacatctttgtgtgcatggaatgcacgaaatgcttcacggcaacaacttttatcacta
ggtcataatgggcctattcgttcaatagtgcattcaccaaattcagcagcgtttttgact
tgttcagatgattttagagcacgattttggtatagaaaacacttgattggagcataa
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