KEGG   Rhopalosiphum maidis (corn leaf aphid): 113548419
Entry
113548419         CDS       T06065                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
rmd  Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rmd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113548419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rmd03041]
    113548419
Spliceosome [BR:rmd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    113548419
 Complex C
   U5 SnRNP specific factors
    113548419
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 Beta-prop_DCAF4 WDR90_beta-prop_4th Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Nbas_N RMC1_N MIOS_WD40 TibC_1st
Other DBs
NCBI-GeneID: 113548419
NCBI-ProteinID: XP_026805086
LinkDB
Position
1:complement(13989200..13991945)
AA seq 340 aa
MVKRKSEVALADAEQNKSVREKYLKTDKSNVRTSSLYMPIMALEGHDGDIFATKFHPEGD
YLASSGYDRKIFIWSVYGECENLGVLTGHSGAVLDMKFSTDGTLIYTSSTDMTVSFWDIY
KGQRVKKLKGHTGFVNSCDSARRGPQMITSASDDCTIKVWDPRKRGGDAVTTFNNNYQVM
SVCFNDTADQVITGGLDNEIKIWDLRKNALLHRLPGHTDTVTGLELSPDGCYLLSNAMDN
SLRIWDVRPYAPADRCLKVFSGHTHNFEKNLLRCAWSPDGSKVSAGSADRYVYIWDANTR
RILYKLPGHNGSVNDVDFHPKEPIIMSGSSDKVVYLGEFD
NT seq 1023 nt   +upstreamnt  +downstreamnt
atggtaaagcgcaagagtgaagtagctctggctgacgccgaacagaataaatcagtcaga
gaaaagtatttgaagaccgataagtctaatgtccgcacatcgagtctgtatatgcctatt
atggcactggaaggtcacgatggtgatatatttgccacaaaatttcatcccgaaggggat
tacctggcgtcttcgggttacgacagaaaaattttcatatggagtgtgtatggtgaatgt
gaaaacttgggagtcctcactggccattctggagctgttttagatatgaaattctccact
gatggaacattaatatacacaagtagtactgatatgactgtttctttttgggatatttac
aagggtcaaagagtcaagaaacttaaaggacatactgggtttgttaattcctgtgattct
gcaagacgtggacctcagatgatcacaagtgcttcagatgattgcaccataaaagtatgg
gatcctagaaaacgcggaggcgatgcagtaactacatttaataataattatcaagtgatg
tctgtatgctttaatgatacagctgatcaagttataactggtggtctagataacgaaata
aaaatttgggatttacgtaaaaatgcgttacttcatcgtttacctggccatacggataca
gtaaccggacttgaattgtcacctgatggctgttatttgctatctaatgcaatggataat
agtttgagaatatgggatgtgagaccttatgcacctgctgatagatgtttgaaagtcttc
tcagggcatactcataattttgaaaagaacttattgcggtgtgcatggtcacctgacggt
tcaaaagtgtcagcgggctcagctgatagatatgtgtatatttgggatgcaaatactcgt
agaatattgtataagttgccaggtcataatggaagtgtaaacgatgtggatttccatcca
aaagaaccaataattatgtctggatccagtgacaaagttgtatatcttggcgagtttgat
tga

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