Rhopalosiphum maidis (corn leaf aphid): 113549306
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Entry
113549306 CDS
T06065
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03013
Nucleocytoplasmic transport
rmd03015
mRNA surveillance pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113549306
09122 Translation
03013 Nucleocytoplasmic transport
113549306
03015 mRNA surveillance pathway
113549306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113549306
03041 Spliceosome [BR:
rmd03041
]
113549306
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113549306
Spliceosome [BR:
rmd03041
]
Complex C
Other components
EJC/TREX
113549306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
RRM_1
Motif
Other DBs
NCBI-GeneID:
113549306
NCBI-ProteinID:
XP_026806341
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All DBs
Position
1:41080917..41085180
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AA seq
796 aa
AA seq
DB search
MSKRTGRKPKRERTSRRRTRRHSSTSETSSEDVPPPKVGKTRATSRVDEGERKVALTIKL
PKPESNDCNEENTTGMWKVECSNGSDGDIQKLKISLRRSPKDLLREQAAEAKCSAERREK
EEAAGSSTNPSILDGSVTNYLEQFGSTVAVEESEQNIIDSSEQEQVVIPPNEPCNQENID
NDQIDSVEVSSEFITPNEEPIVENISTNEELIDAANETIVEENKIHEEVLEPAAIMVESI
NPMNSSKDFPDSTVRPSVDECNISEPILEENSVNISEVVDIPIALSEKIQDIVPESIESV
VDEPNTSEVLETVSNVEINKIANSPIEEEINKSDYINDSEQMEDVVQLTVESPDLVDDED
PKPIDEESKPVYEEEFNSVKVNETESVNEIEPIPVNENKSKLVDKEETKPNEESYNILSS
DIPNLKQVDVEKELNETPKPLSSHPKRKWGSCKTRTPITISPFTLGIIIESNGDSIADNG
EYRSEEGEIQRTDSDEEQEVEEGMEINDTMLIDHEAVDYEAPEEEEKSFIDNDDNKSDKS
LAEEKYEVEPKKKSSVKRTTTTSVIRITNLVRPFTVGQLRDLLQRTGKIVSNGFWIDSIK
SQCIVEYENEDQAIETVYALNDSQWPSTNPKFLKVVFTNKEELNKALNGTHPERLDKQKE
SKVEKLRTQVDNHFILREWDRGKLEDMNGEKDDKPIKRKISDDLHATKDKKLKKDEKDLH
DKRKKSKSKTPERIPTKSLDELFRKTKTTPTLYWSPLSMEQIAEKEDQRRKHLAEMERSQ
KTDRRRRDNLHYPKRR
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaagaaccggtcgcaagccgaaacgtgaacgtacgtcaaggcgacgtaccagg
cgtcattcttctacgtctgaaacatcttcagaagatgtgccaccccccaaagttggcaaa
acccgagctactagcagagttgatgagggtgaaaggaaggttgcattaactataaaattg
ccaaagccagaaagtaatgattgcaatgaagagaacaccactggtatgtggaaagttgag
tgttccaatggatctgatggcgatattcagaagttaaagattagtttgaggcgttcgcct
aaggatttattaagagaacaagctgctgaagctaaatgttcagctgaaagaagagaaaaa
gaagaagccgctggcagttcaacaaatccatctatattggatggtagcgttacaaattat
ttagaacagtttggtagtaccgtggctgttgaagaaagtgaacaaaacataattgattct
agtgaacaagaacaagttgttatccctcccaatgaaccatgcaatcaagaaaatatagat
aatgaccagatagacagtgttgaagtatcatctgagtttataacacccaatgaagaacct
attgtagaaaatatatctactaatgaagaactcattgatgcagctaatgaaactatagtt
gaagaaaacaaaattcatgaagaagttttagaaccagctgccattatggtagagtcgatt
aatcctatgaattcatctaaagattttccagactctacagtccgtccatctgttgatgaa
tgtaatatttcagaacctattttagaagaaaattctgtaaatatttcagaagttgttgat
attccaatagctttaagtgaaaagattcaggatattgtaccagaatctattgaaagtgta
gtggatgaaccaaatacatctgaagtcttagaaacagtatcaaatgttgagataaataaa
atagctaattccccaatagaagaagagattaataaatctgattatattaatgattcagaa
caaatggaagatgttgtacaattaactgttgaatcaccagatttagttgacgatgaagat
cctaaaccaattgatgaagaatctaaaccagtctatgaagaagaattcaattcagtcaaa
gtaaatgaaactgaatcagttaatgaaatagaacctataccagttaatgaaaataaatct
aaactagtagataaagaagaaactaaaccaaatgaagaatcttataacattctatcatca
gatatacccaatttaaaacaggttgatgttgaaaaagaattaaatgaaacgccaaaacca
ttgtcttcacaccctaaacgtaaatgggggtcttgtaaaacaagaacacctataacgata
agtccatttactttgggtattataatagaatctaatggggattctattgctgataatggt
gagtatcgatcagaggaaggagaaatacaaaggacagattcagacgaagaacaagaagtc
gaagaaggtatggaaatcaatgatactatgttaattgatcatgaagcggttgattatgaa
gcaccagaagaagaagaaaaatcttttatagataatgatgataataaatctgataagtca
ttagcagaagaaaaatacgaagtagagccgaaaaaaaaatcatctgtaaaacgtacaacg
actactagcgtaattcgtattacaaaccttgttaggccattcacagttggtcaactaaga
gatttgttacaaagaactggaaaaattgtttctaatggattttggatagattcaattaaa
tctcaatgtattgttgagtatgaaaatgaagatcaagccattgaaactgtatatgcactc
aatgattctcaatggccttcaacaaatcccaaatttttaaaagtcgtttttaccaataaa
gaagaattaaataaagcattaaatggaactcacccagaacgattagataaacaaaaagag
tcaaaagtagaaaaacttagaacacaggtagataatcattttattttacgcgaatgggat
agaggtaagttggaagatatgaatggtgaaaaagatgataaacctattaaaaggaaaata
tctgatgatcttcatgctacaaaggataaaaaattaaagaaagatgaaaaagatctacat
gataaacgtaagaagtcaaaatccaaaacaccagaacgtattcctacaaaaagtttagac
gaactttttcgaaagaccaaaactactccaactctttattggtctcctctttctatggaa
cagattgcagagaaagaagatcaacggcgtaaacatcttgcagagatggaacggtctcaa
aagactgaccgtaggagaagagataaccttcattatcctaagaggcgttag
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