Rhopalosiphum maidis (corn leaf aphid): 113549521
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Entry
113549521 CDS
T06065
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113549521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113549521
Enzymes [BR:
rmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
113549521
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113549521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
NET2A
Motif
Other DBs
NCBI-GeneID:
113549521
NCBI-ProteinID:
XP_026806667
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All DBs
Position
4:complement(35902880..35908929)
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AA seq
633 aa
AA seq
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MDVVNENFYQLLPEIERAIAECDFIAIDGEFTGLHNGTMVSIFDTAAQYYQKLRSNCMDF
LMVQFGLCAVKYNAEKKKFTYRAYNFYTFPKPMSRYAPDCRFLCQSSSMEFLSNHNFDFN
KLFKHGIPFLTVPDEQVLQNELLNRYKQNCSQAQTPSKVSDCIPIPDNHKAEIETACEKV
KELLESETSSEVIIAEKTNSFVRKLIYQEVYKRYSDTKVSLQSRTVEDIGNVMVAFKGRT
RLLMAQERMEREQIELEKAVGFSAVLKKIIASNKPVVGHNMTLDVCHMIHQFCLPLPFSY
SEFQAMVKTISYRFLDTKYISGTEPLKPFFGSTVLNDLKKSLAEQCPNYTDMEPEVPEVG
YSDDVSKLHDAGFDAYLTSTVFVNLCNLYGKVKGIKEHISSDSDYLKQFENKLYMIRYNE
DPCLNLNGPEPQLQRSHVYHITFPAEWKTIDITNIFSPFTNVFIKYINDTSAWVALRDGT
QAKAMNKILPKLQALHKNIILLPWSVYYKDTYATNVSTTTKRKISNCSSSPPKDNVDSSI
AEDSSDDHDGHTPEKVPRISRGRRVSKGGTISPILEGDESTELDADSSAVSSITDVDLKN
NSLSTPSYAQTLKTKKDTDTAELKTIFPVASWD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggatgtggtcaacgagaacttctatcagttgttgccggaaatcgaacgggccattgcc
gaatgtgatttcattgcgattgacggagaatttaccggtcttcacaatggtactatggtc
agcatattcgatacggcagctcagtattaccaaaaactcagaagtaattgtatggacttt
ttgatggttcaatttggtttgtgtgctgtcaaatataatgccgaaaagaaaaagtttaca
tacagggcttataatttttatacctttccaaagcccatgagtcgatatgctccagattgc
cgatttctctgtcagtcttccagcatggaatttctaagcaaccacaattttgactttaat
aaactgtttaaacatggcattcctttccttactgtgcccgatgaacaggtattacaaaat
gaactgcttaatcgatataagcaaaattgttcacaggctcagacaccatcaaaagtctct
gactgcatacctataccagataatcataaagcagaaatagaaactgcttgtgaaaaagta
aaggaacttttagaaagtgaaacaagttctgaagtcattatagcagaaaaaaccaattct
tttgttcgtaaacttatctatcaggaagtttataaaaggtattcagataccaaagtaagt
ttacagtcgagaacagtggaagatattggtaacgtgatggtagctttcaagggaagaaca
agactgttaatggcacaagaaagaatggaacgggaacagattgaattagaaaaagctgtc
ggtttttcagcagttttaaagaaaatcatagcttctaataaaccagttgttggacacaat
atgacattagatgtttgtcatatgattcaccagttttgtttaccattgccatttagctat
agtgaatttcaagctatggttaaaacaatatcatatcgctttttggatacaaagtatata
agtggtacggaaccacttaagccattcttcggatcaacagtattgaatgatttaaaaaag
tcactagcagagcaatgtccaaattatacagatatggaaccagaggtacctgaagttggt
tactctgatgatgtatctaagttgcacgatgctggttttgatgcatatttaaccagtact
gtttttgtcaatctctgcaacttatatggtaaagtgaaaggtatcaaagaacatatttct
tctgattctgattatcttaagcagtttgaaaataaactctatatgattcggtataatgaa
gatccatgtttaaacttaaatggtcctgaacctcaacttcaaagaagtcatgtttatcat
attacattcccagcagaatggaaaactattgatatcacaaacatatttagtccatttact
aatgtatttatcaaatatattaatgatacatctgcttgggtggcgttgagagatggaact
caagcaaaagcaatgaataaaattttgccaaaattacaagctcttcacaaaaacattata
ttgttaccttggtctgtttactacaaagatacatatgctactaatgtatcaactacaaca
aaaagaaaaattagcaattgttcgtcatcacctcctaaagataatgttgattcatcaatt
gctgaggattcatctgatgatcatgatggtcatacaccagaaaaagtaccacgtatttca
agaggacgaagagtttcaaaaggaggaactataagtccaatattagaaggagatgaatct
actgaattagatgctgactcttcagctgtatcaagcatcactgatgtggatttaaaaaat
aatagtttaagtactccaagctatgcgcaaactttaaagacaaaaaaagatacagataca
gcagaattaaaaactattttcccagtagcttcgtgggattaa
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