Rhopalosiphum maidis (corn leaf aphid): 113550050
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Entry
113550050 CDS
T06065
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113550050
03036 Chromosome and associated proteins [BR:
rmd03036
]
113550050
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113550050
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
113550050
SLIK complex
113550050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
HTH_CHD1_Hrp3
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Chromo_MIT1
Fijivirus_P9-2
Motif
Other DBs
NCBI-GeneID:
113550050
NCBI-ProteinID:
XP_026807460
LinkDB
All DBs
Position
1:50379390..50394139
Genome browser
AA seq
1690 aa
AA seq
DB search
MHQNVSEEDSSDSDQNNELNSGSSSSSSSGSQSEFSVKASQEANSTEQSTDEYSPSERPK
RVINKPSSKLSESDESSDYSSQVTKNTKWKSDSSDYDSETDKEEIPRSKSLATLRRQKQP
IKRPTTKLNPRFNKRKNNSYSANSDDEDASKSRNARRRPQAVSYKEESEKSDSDDYLERE
EVEEKEEPPDTSETIEKVLARRQGKIGVVGDITTIYAVEEKGDPNIECDPNEKETQFLIK
WKGWSHIHNTWESMNSLSAQKVKGLKKIDNFVKREDSVGAWRNQMTPEDSEYYECQLELQ
QDLLKSYNIVERIIGESKNPAQKEYYVKWQSLPYSDATWEVASLIERKWPQKIKEFRDRE
GSKRTPSKACRALKYRPKFVQLAEEPDYFGGYDEKLILRDYQLHGVNWLIHSWCKDNSVI
LADEMGLGKTIQTICFLYYLFHNYQMHGPFLVVVPLSTMPSWQREFSLWAPDINIVTYIG
DVESRNIIRETEWCFESSKRLKFNAILTTYEIVLKDSLLLNSLSWAVLMVDEAHRLKNDD
SLLYKALQSFDTNQRLLITGTPLQNSLKELWALLHFIMPGKFDNWEEFEHMHDNAASKGY
TKLHRQLEPYILRRVKKDVEKSLPAKVEQILRVEMTPVQRKYYKWILTKNYNALRKGSKG
SSTTFLNIMIELKKCCNHALLTKPQENENTADDNLQSLLRGSGKLMLLDKLLVRLKETGH
RVLIFSQMVRMLDILAEYLSYRHLPFQRLDGSIKGDIRRQALEHFNAEGSQDFCFLLSTR
AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTKGSVEEDIVER
AKQKMVLDHLVIQRMDTTGRTVLDKKAKNASIPFNKDELTAILKFGAEELFKDDAGADEE
PLCDIDEILRRAETRDEAPTTVGDELLSAFKVASFTFDEEKDIAEKSPTTQNEQENKEWE
EIIPESLRKKVEDEEKAKEMEDLYLPPRSRKTLQKVNQGEGKSEKSKKDESDDSSYDGSD
EDIPRKRGRPRVGTKEVVKGFTDAEVCKILYYIIYYVFFSKIICFLFYFFQIRKLIKSCK
RFPNPMKRIDAVAGDADLQEKPKSELKKIVQMLYDRCNEACNSEHTEKESDATNDDGVKK
RNRGPSIKLGGVAVNAKSVLACSEELDILDDIIPSDEEERSKFTLDLKRVKSANFDFDWD
ITDDSKLLTGIYLYGLGSWEAIKIDTALGLSDKILSNEDKKPQAKHLLARSEYLLKMLKK
TQVVVKGEPKPKKARKVKEGKSREIIDDDSTDNENGNKKKNDSATNHDEKLKSKKDLINV
KSGMTGSPKKERKRKIATKTGPMHFTANSEPKAVNVDDIVELPKEKFLECKEKMRPVKKV
LKALDDPEEKKNELRYVNHMQECLIEIGSHIGKCLEEYKDPDKIREWRSNLWFFVSKFTE
FDSKKLLKIYRRGLHTTEKLEKDNKVKDRNKNKDKVRDKSKEDKKLQKNMEPEDSLTSLK
RKSRDSDELEKISKKQKTTNSNPGVLLTTPNSIPTTPPSSSNSSNATRSYDQSSNRYDTN
YNHHRNRSTPYSRSDNRSDTRNDNRRFSSSRDSITRRERYDNSYRSRPAFREREREIDSD
MRMYDKIRYQQQAYAAYGQAAAASFYAPELYSRSSSASYMSLPQYSVSADWHPPVSEYRR
DYERRPRNNS
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagaatgtatcagaagaagactcatcagactcggaccagaataatgaacttaat
tcaggttcatcatcatcatcaagctctggaagtcaatctgaatttagtgtaaaagcatct
caagaagctaacagtaccgaacaatcaactgatgaatatagtccttctgagcgtcccaaa
cgtgtgattaataaaccatcgtcaaaacttagcgagagcgacgaatcaagtgattacagt
tctcaagtcactaaaaatacaaagtggaaaagtgatagctcagattatgattctgaaact
gataaagaagaaatacctcgtagtaaatcattagctacattacgacgtcaaaaacaacct
ataaaacgtcctacaaccaaactaaatccccgttttaataaaagaaaaaataatagttat
agtgctaacagcgatgacgaagatgctagtaaatctagaaatgcacgtcgaaggccacag
gcagttagttataaagaagaaagtgaaaaaagcgatagtgatgattacttggaaagagag
gaggttgaagaaaaagaagaaccacctgatacttctgaaacaattgaaaaagttttagct
cgaagacaaggcaaaataggtgttgtaggagatataacaactatttatgcagtagaggaa
aaaggagatcctaatattgagtgtgatcctaatgaaaaagagactcagtttttgataaaa
tggaagggttggtcacatattcataatacttgggaatctatgaattcactttcggctcaa
aaagttaaagggcttaagaaaattgataattttgtgaaacgtgaagactctgtcggtgca
tggcgtaatcaaatgacacctgaagattctgaatattatgaatgtcaacttgaacttcaa
caagatttgttaaaaagctacaatattgttgaaaggataataggggaatctaaaaatcca
gcacaaaaagaatactatgttaaatggcaatctttgccttatagtgatgcaacatgggaa
gtagcttcattaatagaacgtaagtggcctcaaaaaataaaagaattcagagatcgagag
ggctcaaaaagaacaccatctaaagcatgtagagctttaaaatatcgtccaaaatttgtg
caactcgctgaagaacctgattattttggtggttatgatgagaaactaatacttcgagat
taccaattacatggtgtgaattggcttattcattcttggtgcaaggacaattctgtaatt
cttgctgatgaaatgggtctcggaaaaactatacaaaccatatgttttctttattattta
tttcacaactatcaaatgcatggtccattcctagttgttgttcctttatcaactatgcct
tcatggcaacgagagttcagtttatgggctcctgatataaatattgttacatatattgga
gatgttgaatctcgtaacataatacgtgaaacagaatggtgttttgagagttctaaaaga
ttaaaatttaatgctattctcactacatatgaaattgttcttaaagatagtttgctttta
aatagtcttagttgggctgttttaatggttgatgaagcacatcgtttaaaaaatgacgat
tctcttttgtacaaagctcttcaaagttttgacactaatcagaggttacttataacagga
actcctttgcaaaacagtttaaaagagctgtgggcattgttgcatttcattatgcctgga
aaatttgataactgggaagagtttgagcatatgcacgacaatgcagctagcaaaggttat
acaaaacttcatagacaacttgagccatatattttacgccgtgttaaaaaagatgtagaa
aagtcattaccagccaaagttgaacaaatattaagggtagaaatgactcctgtacaaaga
aaatattacaaatggattttaactaaaaattataatgctttaagaaaaggatctaaggga
tcatcaacaactttcttaaatatcatgatagaattaaaaaagtgttgcaatcatgctctc
ttgactaaaccccaagagaatgaaaacaccgctgatgacaatcttcagagtttattacga
ggatctggaaaacttatgctacttgataagttattagtacgtcttaaagaaactggtcac
agagtactgattttctctcagatggttcgtatgttagatattcttgctgaatatctaagt
tatcgacatttaccatttcaaagacttgatggtagcattaaaggtgatataagaagacag
gcattagaacattttaatgctgagggatctcaagatttttgttttttattatcaactcga
gctggtggactcggtattaatttagctacagcagatacagttattatttttgattctgat
tggaatcctcaaaatgatttacaagcccaagcacgtgctcacaggattgggcagaagaat
caagttaatatttatcgactggttacaaaaggatcagtcgaagaagatattgttgaaaga
gcaaagcaaaaaatggttttggatcatttagtaattcaaagaatggatactactggtcgt
actgttttagacaaaaaagctaaaaatgcatctattccttttaataaagatgagcttaca
gcaatattaaaatttggtgcagaagaactatttaaagatgatgctggtgctgacgaagaa
cctttatgtgatattgatgaaattttgagaagagctgaaacacgagatgaagcaccgaca
actgttggtgatgaacttttatctgcctttaaagtagctagttttacttttgacgaagaa
aaagatattgctgaaaagtcacctactactcaaaatgaacaagaaaataaagaatgggaa
gaaattatacctgaatcattaagaaaaaaagttgaggacgaagaaaaggcaaaggaaatg
gaagatctttatttacctcccagaagtagaaaaacattacagaaagtaaatcaaggagaa
gggaaaagtgaaaaatccaaaaaagatgaatctgatgattctagctatgatggtagtgat
gaagatatacctagaaaacgtggaagaccacgtgttggaaccaaagaagtagtcaaaggt
tttaccgatgcagaagtatgtaaaatattgtactatattatttattatgtttttttttca
aaaattatttgttttttattttacttttttcagattcgaaaattgattaaaagttgtaaa
cgttttcctaaccctatgaaacgtattgatgctgtagctggtgatgcagatcttcaagag
aaacctaaatcagaattaaaaaaaatagtccaaatgttatatgatcgttgtaatgaagca
tgtaatagtgagcatacagaaaaagaatctgatgctactaatgatgatggtgttaaaaaa
agaaatagaggaccttcaataaaacttggtggtgtggcagtaaatgctaaaagtgtgcta
gcttgtagtgaagaattggatattttggatgatataataccatcagacgaagaagaaaga
tcaaagttcactttggatttgaaacgcgttaaatcagctaattttgattttgattgggat
ataactgatgattcgaaactgttaacaggaatctatctttatggtttaggttcatgggaa
gcaattaaaattgacactgcattaggcctcagtgacaaaatattatctaatgaagataaa
aaaccgcaggctaaacatttattagctcgttctgagtatctactgaagatgttgaaaaag
actcaagtagtagttaaaggtgaaccaaaacctaaaaaggcacgtaaggtaaaagaagga
aaatcaagagaaataatcgatgacgatagtactgataatgaaaatggaaacaagaaaaaa
aatgatagtgctactaatcatgatgaaaaattgaaatcaaaaaaagatctaatcaatgta
aaatctggaatgacgggttcaccaaaaaaagaaagaaaacgtaaaatagctactaaaaca
ggtccaatgcatttcactgctaatagtgaacctaaggctgtaaatgtggatgatattgtt
gagttgccaaaagaaaaatttttagaatgtaaagaaaaaatgaggccagtgaagaaagta
ttaaaagctttagatgatcctgaagagaaaaaaaatgaattacgttatgtaaatcatatg
caagaatgcttaatagaaataggttcacacattggtaaatgcttagaagagtataaggac
ccagataaaataagagaatggagaagcaatttgtggttttttgtatcaaagtttactgaa
tttgattctaaaaaactgttaaaaatttatcgacgaggcttacatacaactgaaaaactt
gaaaaagataataaagtaaaagatagaaataaaaataaagataaagtaagagataaatct
aaagaagataaaaaactccaaaaaaatatggaacctgaagattcattaacatcattaaaa
cgaaaatcacgtgatagtgatgaattagaaaaaataagcaaaaaacaaaaaactacaaat
agtaatccaggcgttttgttaaccactccaaattctatcccaactacgcctccaagttct
agtaattcctccaatgctacaaggtcatatgatcaaagcagtaatcgatatgatacaaat
tacaatcatcatagaaataggagtacaccctattctcgaagtgataatcgaagtgatact
cgaaatgataatagaaggttttcatcaagtcgagactcaatcacccggcgtgaacgatat
gataatagttatcgtagtcgtcctgcattcagggaaagagaaagggagatcgattctgat
atgcgaatgtatgacaaaattagatatcaacagcaagcctatgctgcatatggacaagct
gctgcagctagtttctatgctcctgaattgtatagccgttcaagttctgcgtcatatatg
agtttacctcaatatagtgtttctgctgattggcatcctcctgtatcagaatataggaga
gactatgaacgtagacctcgaaataattcctag
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