Rhopalosiphum maidis (corn leaf aphid): 113550215
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Entry
113550215 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rmd04131
]
113550215
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rmd04147
]
113550215
Membrane trafficking [BR:
rmd04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
113550215
Exosome [BR:
rmd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113550215
Exosomal proteins of bladder cancer cells
113550215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
WD40_RFWD3
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
113550215
NCBI-ProteinID:
XP_026807727
LinkDB
All DBs
Position
4:complement(19038087..19043550)
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AA seq
1229 aa
AA seq
DB search
MLTKFETKSARIKGLTFHSKRPWILASLHTGVIQLWDYRMCTLLDKFDEHDGPVRGISFH
SQQPIFVSGGDDYKIKVWNYTQRRCIFTLLGHLDYIRSTMFHHEYPWILSASDDQTIRIW
NWQSRACICVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNVAPGPGGLD
DHLKNPNATDLFGQADAVVKHVLEGHDRGVNWCSFHPTLPLIVSGADDRQIKLWRMNDSK
AWEVDTCRGHYNNVSCVVFHPKQELILSNSEDKSIRVWDMTKRTCLNTFRREHERFWVLA
AHPTSNLFAAGHDSGMIIFKLERERPAFTQFGNFLFYVKERFLHRLDFTTHKVTTVMQLR
GGGRTPIYSISYNPAINAMLVCTRNSSNLENSTYDLYQMPKESADSSVSEVPESKRSSGL
MAVWIARNRFAVLDKTHMLAVKNLKNELTKKNIGPNNIDEIFYAGTGLLLLRDPENLTLF
DVTQKRVLAQAKIAKCRYVIWANDGSLLAVLCKHNIYICNRKLEILCTIHENSRIKSGAW
DDCGAFIYTTSNHIKYALPDGGDYGIIRTLDLPIYITKVSGNQVFCLDRECRPRVLNIDT
TEYKFKLALIKRKYEEVLHIVRNDRLIGQSIIAYLQQKGYPEVALHFVKDNKTRFSLALE
CGNIDIALEAARTLDDKVCWEQLGQSALLQGNHQVVEMCYQRTKNFDKLSFLYLITGNLD
KLRKMMKIAEIRKDVSGHYQGALLLGDCHERIKILNNXGHKSLAYLTAATHGLDAEAETI
KEGYEGNLPTVTAGAKLLRPPAPVSQAESNWPLLTVSKGFFEGAILSAGKASGLIDTAIG
EDVAVEEEGWGAEADLGLEGRISPTHSEAEEEAASAAAADGGGEDGWDVGDEEVELPPEV
LVSRQQDSDYFVAPQPAACPSLAWSANSQLAIDHIKSGDFENAFRLLNEQIGVTNFGPLK
NLFMDSYLKSCTSYTPLPTHPSLFVYPNRNWKDGGGKGNNKPVLDIKLEQLLGELQACYQ
LTTAGKFPETVAKFRSILMSVPLLCVDTKQEVNEVVQLVHICKEYLVGLVMETARKEHPK
TTAEDQKRIAEMVAYFTHCDLQMSHKILTLRTAINVFYKIGNHNTAASFAKRLLELGPRA
DVAQQARKMLQACDLNPVNKLQVAYDQHNPFSICAYSFVPIYKGKEEVKCPFCSASYQPV
HKGKVCNICQISSIGRESTGLKITAAHYR
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgttaacaaaatttgaaaccaaatctgcccgtataaaaggccttacatttcattcaaaa
cggccatggatattggctagtcttcatacaggggtaatccaattatgggactaccgtatg
tgtaccttattggataaatttgatgaacatgatggacctgtacgtggtattagtttccac
agtcagcaacctatatttgtatctggtggtgatgattataaaatcaaagtatggaattat
actcaacgacgatgcatatttacattacttggtcacttggattatattcgttcaacaatg
ttccatcatgagtatccttggatattaagtgcatctgatgatcagacaataagaatatgg
aactggcaaagccgtgcctgtatttgtgttttaactggtcataaccattatgtcatgtgt
gctcagttccatccatctgaggatttagtagtctctgcatctttagatcagacggttcgt
gtttgggatatttctggactacgtaagaagaatgtagctccaggccctgggggactagat
gatcacttaaagaatccaaatgctacagatctatttggtcaagctgatgctgttgttaaa
catgtacttgaaggtcatgaccgtggtgttaattggtgttcattccatcctactttgcca
cttattgtctctggtgctgatgatcgtcaaataaaattatggagaatgaatgattctaaa
gcatgggaagtagacacatgccgtggacattataacaatgtttcctgtgttgttttccat
ccaaaacaagagcttattctgtcaaattctgaggataaaagtatacgcgtttgggatatg
acaaaaagaacatgtctcaatacatttaggcgagaacatgaacgattttgggtgcttgct
gcacatccaacctccaacttatttgctgctggacatgattcgggtatgattatattcaag
ttggaacgtgaaagacccgcatttacacaatttggtaatttcttattctatgtaaaagag
agattcttacatcgtctcgatttcaccacccacaaagtgaccactgtcatgcaactaaga
ggtggtggacgtacacctatttacagtattagttacaacccagctataaatgcaatgctt
gtatgtacaagaaattcatcaaaccttgaaaatagcacttatgatttatatcaaatgcct
aaggaatcagcagacagtagtgtttcagaagtacctgagagtaaaaggtctagtggtcta
atggctgtctggatagctagaaatcggtttgctgtcttagacaaaacacatatgttggcg
gtaaaaaatttaaaaaatgaattaacaaaaaaaaacataggacccaataatatagatgag
attttttatgccggtacaggtttattgttactgcgtgatcccgaaaatttgactttgttt
gatgttacacaaaaaagagtattggctcaagctaagatagccaaatgtcgatatgttata
tgggcaaatgatgggtcattgttggctgttttatgcaaacataatatttatatatgtaat
aggaaattggaaattttgtgtacaatacatgaaaattccagaattaaatcgggtgcatgg
gatgattgtggtgcatttatatataccactagtaatcatattaaatatgctttgccggat
ggtggtgactatggaatcatacgtacattagatttacctatttatataacaaaagtcagt
ggcaaccaagtgttctgtttagacagggagtgtcgaccaagagtattaaatattgataca
acagaatacaaatttaaattagcactcatcaaacgcaagtatgaggaagttttgcacata
gtcaggaacgatcggttaatcggacaatctataatagcatacttacagcaaaaagggtat
ccagaagtggcattacattttgtcaaagacaacaagaccagattttctttagcactggag
tgtgggaatatagacattgctttggaagcggctaggactttggacgataaggtgtgttgg
gaacaacttggccagtccgcgttgctgcagggcaaccatcaggtagtggagatgtgctac
cagaggactaagaactttgacaagctatcgtttttgtatctgatcaccggtaatctagac
aaactgaggaaaatgatgaaaatcgcggaaatacgtaaggatgtatctgggcattaccag
ggtgcgttgttgctgggcgattgtcacgaaaggatcaagatattgaacaactagggtcac
aagtctctcgcctacctgacggccgctacccacggtttggacgccgaagccgagaccatc
aaagagggctacgagggtaatctaccgacggtgactgctggcgccaagttgctcagacct
cccgccccagtcagccaagccgagtccaactggcccttgttgactgtgtctaaaggtttc
ttcgagggtgctattctgtcagcaggcaaagcgtcagggctcatcgatacagcgatcggt
gaggacgtggctgttgaggaagagggttggggggcagaggcggacttgggtctggaggga
agaatatcgcctacgcactcggaagccgaggaagaagcggcatctgcagccgcagcggac
ggtggtggtgaggacggctgggacgtgggcgatgaagaggtagaacttcctccagaagtg
ctggtatctcgacaacaagactccgactatttcgtagcgccgcagccggccgcctgcccg
tcccttgcatggtcagccaacagtcaactggccatcgaccacatcaagtcgggcgatttc
gagaacgcatttagactactcaatgaacagatcggcgtcaccaacttcggaccgcttaag
aacctgttcatggactcatacctcaagtcgtgcacatcgtacacgccactacctacgcat
ccgtcgctgttcgtataccctaatcgcaactggaaagacggcggtggaaaaggaaacaac
aagcctgtgctagacataaaactagaacagctgctcggcgaactacaggcgtgttatcag
ctgacgacagccggcaagttcccggaaacggtggccaagttccggtcgatactgatgtcc
gtgccgctgctgtgtgtggacaccaagcaagaggtgaacgaagtcgtgcagctggtgcac
atatgcaaggagtacttagtcgggctggtgatggagacagcccgcaaggagcacccgaag
accacggcggaggaccagaagcgcattgctgagatggtcgcgtacttcacgcactgtgac
ctgcaaatgtcgcacaaaatcctcacactccgcacggccatcaacgtgttctacaagatc
ggcaaccacaacacggccgcgtcgttcgccaaacggctgctggagctgggcccacgcgcc
gacgtggcgcaacaggctcgtaaaatgctgcaggcctgcgacctgaacccggtcaacaag
ctgcaggtggcctacgaccaacacaatccgttctcgatatgcgcctactcgttcgttcca
atctacaagggaaaggaggaggtgaaatgtccgttctgttcggcgtcgtaccaacctgtg
cacaagggaaaggtgtgcaacatatgtcagatatcgtccatcggccgagagtccacggga
ctcaagataactgcggcacactaccggtga
DBGET
integrated database retrieval system
