Rhopalosiphum maidis (corn leaf aphid): 113550355
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Entry
113550355 CDS
T06065
Name
(RefSeq) ATP-dependent RNA helicase dbp2-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113550355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113550355
03009 Ribosome biogenesis [BR:
rmd03009
]
113550355
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113550355
Spliceosome [BR:
rmd03041
]
Complex A
U1 snRNP components
U1 related factors
113550355
Complex B
113550355
Ribosome biogenesis [BR:
rmd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113550355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113550355
NCBI-ProteinID:
XP_026807913
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All DBs
Position
4:19427233..19436884
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AA seq
663 aa
AA seq
DB search
MRRASYGGGSRGAPRGGSMNRGDSYSGRGSSFGSRGGGDSDGYRRGGPGGGGGNSFNSLK
SKQPGGALRKPKWENETLQPFQKNFYTPHPLVLNRPRLEVENYVREKEISYVGSNIPDPI
MNFNEVILPDYVFNEVKKQGFSNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAI
LHINHQPRLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTFVRNTCVFGGAPKGPQVDD
LERGVEIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR
QVLMWSATWPPEVKNLAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDFEKEQKLYALL
TDIFSQPDNKTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQFRSGQAN
ILVATDVAARGLDVDDVKYVINYDYPNSSEDYVHRIGRTGRSSRTGTAFTFVTPSNARQA
KDLISVLQEAKQVVNPKLFELAEMAATGVFGKMDRSNRSRDRGGQNNRGRGNHDRGSRGN
YGSGGRGAYRGGSRGGYLGGSHSSSRDSYSSGNQGGRSGFTGTIPVNNIMNNNNGTAPGR
ERASRWGDSNNSQVTQHQPSQHQPTFVSQPPVQIPNMSNPPPGYASNYGFQAPQPNSNFR
GSF
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagacgtgcaagttatggtggtggtagtcgaggagcaccaagaggtggcagcatgaac
agaggcgatagttatagtggccgtggctcaagttttggtagccgtggtggtggagacagt
gatggatatagacgtggtgggccaggaggaggtggaggaaatagttttaatagcctgaag
agtaagcaacctggtggggctttacgtaaacccaaatgggaaaatgaaacacttcaacct
ttccaaaaaaatttttatactcctcatccgttagttttaaaccgtcctagattagaagtg
gaaaactatgttagggaaaaagaaatttcttatgttggtagtaatatcccagatccaatt
atgaatttcaatgaagtcattcttccagactatgttttcaatgaagtaaagaaacaagga
tttagcaatccaactcctattcaagcagttagttggccaattgcactaagtggaagaaac
atggttggaatagctcaaacaggttctggaaaaactcttgcttatatgttgccggcaata
ttacacatcaatcatcaaccccgtctcttacgttatgatggtccaatagttttagtattg
gcacctactcgtgaacttgctcagcaaattcaacaagttgctgtttcatttggtacctct
acttttgtaagaaacacttgtgtatttgggggtgctcccaaaggtcctcaagttgatgat
ttagaacggggtgtagaaattgtaatcgcaacacctggaagacttattgacttcttggaa
agaaatacaactaatttaaaacgatgcacatatttagtcctggatgaagctgatcgtatg
ttagatatgggttttgagcctcaaatacgtaaaattattgaacagataaggccggatcgt
caagttttaatgtggtcagcaacatggccccctgaagttaaaaatttagctgaagagttt
ttagacgattacatacaagtgaatgttggttctttaaatttatctgctaatcataatatc
tctcaagtagttgatgtgtgtgatgattttgaaaaagaacaaaaactgtatgctttgcta
acagatatattttcacaaccagataataaaactatcatttttgtggaaactaaacgttct
gttgataatattgtgaaattagtgaaccggaatggatggagatccattggaatacatggt
aataagtctcaaaatgaacgcgatcacacattgaatcaatttcgttctggccaagcaaat
attctggtggcaactgatgtagctgctcgtggtttggatgtggacgatgtcaaatatgtg
ataaattatgattacccaaattcttctgaggattatgtacatcgtattggtagaacaggt
cgttctagccgtactggaaccgcatttacatttgttacccccagcaatgctcgtcaagcc
aaggatctcatatctgtcttacaagaagctaaacaagtagttaatccaaagctttttgaa
cttgcagaaatggctgctactggggtgtttggaaagatggaccgttccaatcgtagtcgt
gatcgtggtggacaaaacaatcgaggccgtggtaatcatgaccgtggtagtcgtggaaat
tatggtagtggaggtcgaggtgcatatagaggaggaagtcgaggtggttacttaggtgga
agtcatagttctagtcgtgatagctattcaagcggaaatcagggaggtcgtagtgggttt
acaggaacaattcctgttaacaacattatgaataataacaacggaactgctccaggacgt
gaaagagcaagcagatggggagatagcaataacagtcaagtaactcagcaccaacctagt
cagcatcaaccaacatttgtgtcgcaaccgcctgttcaaatacctaatatgagcaatcca
cctcctggttatgcaagtaattatgggttccaagcgccacaacctaacagtaactttaga
ggaagtttttaa
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