Rhopalosiphum maidis (corn leaf aphid): 113550377
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Entry
113550377 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC113550377
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113550377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113550377
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113550377
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113550377
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113550377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
113550377
NCBI-ProteinID:
XP_026807948
LinkDB
All DBs
Position
1:complement(34537141..34556118)
Genome browser
AA seq
1827 aa
AA seq
DB search
MTAKEKEVAEEYFNALADLNINSKPLINMLTMLAEENSAYAPIIVQCIERQLHKVQADSK
LPVLYLIDSVMKNIGQPYTPLFVQNIEKLFASTFIKVDEKTRGNMYKLRSTWNEVVTPTK
LHALDVMIHSIDKNWPLSAAPPNIHVNPKFLNNVNHTETPKPVQPIIHNDIDEVSLREKF
IKKQKELLELQQKKLELELLQTKNQIEIQKKRSMNKINLSKNAFNASASSSTVSISPSNE
EIYAKIQSSENPRRVTENPVKIMDVSSIGSESPSMPIKVIVSPSKKFQPTSLPSVQQSFK
NPPQPFVPQQQSTEMVVSSPIYNINQPIAKINPVSTQLLQTLNRDPRLRKVETAVKPSPS
LTNDVKQPIIKNKDDKKLDKPKRDNSKHRESKRKERSPSCPPSKKELSRKPHKKADRKER
SIKDEKYHKRRDXKKNIKELDLKKKNVILSNIKAEEQDEAVTTKCAILPKIEDKLFKEEP
KNDIILPSHEAIDINVSKEKDLITGVVNEADIKSSENTSELEKTDSLEDSDSLKRLRIYM
QTMKKSPDPSTAATTPLEMKNDSDTHAVKSNQSILADIIIKQQNDIDLRIKVPTVKRTSD
SIKTDDIEPAAKKSKSEIIDELFGAEDVDLRTLSAPPIVPTPPPPPQISETSNTEIGKSW
AKYKEIKPDTFKTPYKSPAKKIPCELNETLVDNNDTMDVDMRAKPTQNNKSHILRQAEEA
LNAGSISFDEYKKIMCQVIEMSEVEKLEEVNNTEDTNSKLKEFTIPKIALPVNGNSSTDL
KSTLVESVTIVEKPVDENSPGISSWNIVNKKPSDVSGSDSDGSSKSCSTGSEESKRINKK
SDSEDRAVYKRRKTTFKRNEKENSKTRTWRNNKSWNSRQENGSRFSQNRIEPWSRGPRPN
YSHSTRSLVPPPMYEVPRPTAPFASSSPDWTVPVIPPSDPLILDMIAHDATKTINIDGVS
REVRFYGPTAITFVSWDDPREIYFQGPPKNIIFDDLFPVLCHFNSPDREFLLDGQPHRVR
LGAPTRELYLDGNFYECFFGGSPIFTDLGGVKRSIKLEGPPPSVNIGNTKRQDLVAGRIA
IIIDNSYTVPVYLDAKPQRIDVGNTALIFRFIDGLMRAMVNDQPFKVNYNGPPQAIVVRG
NKHYLRFTGLPPNIRPGYAAISQMMGVVLTEDSSAESLPPIPAPPMPPNFTGFEMTTITP
NDDINQLPIQPFSSSYSLAPNSASVPLLPNVAQQLEPVTSSYVPPTVSAPIIPPPVLPSD
MDINELFKKLVDSGIVPKDKPKEVVQSKLKKKEKEAENLTIKPVDFSDPLSLKQKQPGLI
HNLYTGIQCSSCGIRFTAEFTIKYSSHLDWHFRQNRREKMASKTVQSRKWYYDTSDWCKY
EEQEDETTRAASWFDIQAEQGAKEDEKLEEENVPCVPAGENSELAACYLCHDQFEQFYNE
KDEEWQLKNCVEKDKRLYHPMCYDDMIKTREEKIRKRNRAIEEAKQLESQKLEIKDEQQL
QLAEDIKIKDEENEELKLKREEKLITEIDPIIKREILLEKEPIRNQEIGTQLETVTEKEV
VPLKETIIKTETTAMETETFKETETIKETEETIKKTNKDTETSSMETETELITETDPIKL
KESEEEIAVENVIQTEPVSQEPSTEENVNTKNYEDLEIPDTMEIIQVTEVLSPKLIDEPI
IENVNSSSSPPITQEIVSEEIKPKSPSPVSTMTCSIDGNTDTEWNVPVAPAMGTIKINIS
QKITPVVKPIVLTENTPIEPQSPQDFTQTFGEIDPDQPPPPGLEMETVVVPKVQRDMKPR
LMHNAKKLKEYPIVNKGKEMSGLCSIM
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaaggaaaaagaagtagcagaagaatattttaatgccttggccgacctcaac
atcaatagcaagcctttgattaacatgttgacaatgctggccgaagagaactcagcttat
gcgccaatcattgtacagtgtattgaaagacaactgcataaggtgcaagccgacagcaag
ttaccagtgctttacttaattgactcagtcatgaaaaacattggacagccatatacacca
cttttcgttcaaaatattgagaaactttttgctagcactttcattaaagttgatgaaaaa
actagaggaaatatgtataaattacgttctacgtggaatgaagttgtaacacctacaaaa
cttcatgctctcgatgtaatgattcattcaattgataaaaattggccgttgagtgctgct
ccaccaaacattcatgttaatccaaaatttttaaataatgttaatcatactgaaacgcca
aaacctgtacaacctattatacacaatgatatagatgaggtatcattacgggaaaagttc
attaaaaaacaaaaggagctacttgagctacagcaaaaaaaattggaactagaattattg
caaaccaaaaatcaaattgaaattcaaaaaaaaagatcaatgaacaagataaatctatca
aaaaatgcttttaacgcaagtgcatcatcttcgacagtgagtatttcaccttcaaatgaa
gaaatatatgcaaaaattcagtcatctgaaaatcctcgaagagtaactgagaatcccgtt
aaaattatggacgtatcttctattggttctgagtcaccttcaatgccaattaaagttatt
gtttcaccttctaaaaaattccaaccaacatctttgccttcagtacaacaatcatttaaa
aatcctccacaaccatttgtaccgcaacaacaaagtacagaaatggttgtttccagtcca
atatacaatatcaaccaaccaattgctaaaatcaaccctgtcagtacacaattattacaa
actctaaaccgcgatccacgcttaagaaaagttgaaactgctgtaaagccatcgccatca
ctaactaatgatgttaaacaaccaattattaaaaataaagatgataaaaaacttgataaa
cccaaaagagacaatagtaaacaccgtgaatcaaaaagaaaagaaagaagtccaagctgt
ccaccttctaaaaaagaactatcaagaaagccacataaaaaagctgaccgcaaagaaaga
agcataaaagatgaaaaatatcacaaaagaagagatngaaaaaaaaatattaaagaactg
gacttaaagaaaaagaatgtaatattatcaaatataaaagctgaagaacaggatgaagca
gtgactacaaaatgtgcaatactgcctaagattgaagataaattgttcaaagaggaacct
aaaaatgatataattcttcctagtcatgaagctattgacataaatgtttctaaagaaaaa
gacttaattactggagtagtgaatgaagctgatatcaaaagttctgaaaatacctctgaa
ctagaaaaaactgattctctagaagattctgattctttaaaacgtcttcgtatctatatg
caaacaatgaaaaaatcccctgatccatcaactgctgctacaacaccattagaaatgaaa
aatgactcagacactcatgctgtaaaatccaatcaaagtattcttgcagacattattatc
aaacaacaaaatgacattgacttaagaattaaagtcccgactgtgaagaggacctccgat
tcaatcaaaactgatgatattgaacctgcagcaaaaaagagcaaatcagaaatcattgat
gaactctttggtgccgaagatgtagatttacgtacattatctgctccgcctattgtacct
acaccaccacctccaccacaaatatctgaaacatcgaatactgagattggtaaatcttgg
gcaaaatataaggaaataaaaccagatacatttaaaacaccatacaagtctcctgccaaa
aaaattccttgtgaattaaatgaaacattagttgacaacaatgatacaatggatgtcgat
atgagagctaaaccaacacaaaacaataaaagtcacattcttagacaagctgaagaagct
ttaaatgcaggaagcatatcttttgatgaatataaaaaaataatgtgtcaggtaattgaa
atgtctgaagtggaaaaattagaagaagtcaataatacagaagatactaattctaagtta
aaggaatttactattccgaaaattgctttaccggtaaatggaaatagtagtactgattta
aaatcgaccttagtagaatctgtaactattgttgaaaaacctgttgatgaaaatagtcct
gggattagctcttggaacattgttaacaaaaaacctagtgatgtcagtggaagtgatagc
gatggttcttcaaaaagttgttctactggttctgaagaatcaaaaagaattaataagaaa
tcagattctgaggatagagctgtatataaaaggcgtaaaacaacatttaaacgtaatgaa
aaagaaaattctaaaactcgtacttggagaaataataaaagttggaattcaagacaagaa
aatgggtctagattctctcaaaatagaattgaaccttggtctagaggacctcgtccaaat
tattctcattctacaagatctcttgttccgccaccgatgtatgaagtgccaagaccaact
gctccatttgcatcttcttctcccgattggacagttcctgttattcctccttcagatcct
ctaatattggatatgattgctcatgatgctactaaaactatcaatattgatggcgtatca
agagaagtacgattttatggtccaacagcaattacttttgtatcatgggacgatcctaga
gagatatactttcaaggacctccaaaaaatattatatttgatgatctttttccagtcttg
tgtcatttcaatagtcctgatagagaatttttattggatggtcaacctcatagagtgcgg
ttaggtgcaccaactcgagaactttatttagatggcaatttctacgaatgtttttttggt
ggctctccaatatttacagaccttggtggtgttaaaagatctattaaacttgaaggacct
cctccttcagttaatataggaaacactaagcgacaagatttagttgctgggcgtatcgct
attattattgataactcttacaccgtacctgtctatttagatgctaaacctcagcgtatt
gatgtgggaaacacagcacttatttttcgttttattgatggtttaatgagagctatggtt
aatgatcaaccgttcaaagtcaactataatggacctccacaagcgattgttgtaagaggc
aataagcattacttaagatttacaggattaccaccaaatattagacctggttatgctgct
atttctcaaatgatgggtgttgtattaactgaagattcttctgccgaatctttaccacca
attcctgctccacctatgccaccaaatttcactggttttgaaatgactacaataactcca
aatgatgatattaaccaacttcctatacaaccattctcttcttcttattctttagcacca
aactcagcatcagtacctctacttcctaatgttgctcaacaattagaacctgttacaagt
tcttatgtaccacctacagtgtctgctcctataataccacctcctgtcttacctagtgat
atggatataaatgagttatttaagaagctagtcgacagtggaattgtaccaaaagacaag
ccaaaagaagttgttcaatcaaaactaaaaaagaaagagaaggaggctgaaaatttaacc
ataaaacctgttgatttttcagatcctttatcattaaaacaaaaacaaccaggattgatt
cacaatttatacacaggaatccagtgcagttcttgtggaattcgtttcactgcagagttt
accattaagtatagtagtcatttagattggcattttagacaaaataggcgtgaaaaaatg
gcaagcaaaactgtccaatcacggaaatggtattatgatactagtgattggtgtaaatat
gaagaacaagaagatgaaactactagagctgctagctggtttgatatacaagcagaacaa
ggtgctaaagaagatgaaaagttggaagaagagaatgtcccttgtgttccagctggtgaa
aatagtgaattggctgcctgttatttgtgtcatgatcagtttgaacaattttataacgaa
aaagatgaagaatggcaattgaaaaactgtgtggaaaaggataaacgactttatcatcca
atgtgctatgatgatatgattaaaactcgagaggaaaaaattcgtaagagaaatcgagct
attgaagaagctaaacaattagaaagccaaaaacttgaaattaaagatgaacaacaactg
caattggcagaagatataaaaattaaagatgaagaaaatgaagaattaaaattgaaaagg
gaagaaaaactgataactgagatagatccaataataaaaagagaaatattgttggaaaaa
gaaccaattagaaatcaagaaataggtacacaattagaaacggtcacagaaaaagaagta
gttccacttaaagaaactattataaaaacagaaacaacagctatggaaacagaaacattt
aaagaaacagaaacaattaaggaaacggaagaaacaattaagaaaacaaacaaggataca
gaaacaagcagcatggaaactgaaactgaattaattaccgaaactgatccaattaaacta
aaagaaagtgaagaagaaattgcagttgaaaatgtaatccaaactgaaccggtttctcaa
gaaccatcgactgaagaaaatgtgaatacaaagaattatgaagatttggaaattcctgat
accatggaaattattcaagtgaccgaagttttatcacctaaattaatagatgaacctatt
attgagaatgttaacagttcatcatcccccccaatcactcaagaaattgtatctgaagaa
attaaacctaaatctccatctcctgtatctacaatgacatgttctattgatggaaatact
gacactgaatggaatgttccagttgctcctgcaatggggacaatcaagataaacataagt
caaaaaatcacacctgttgtaaaaccaattgtcctcactgaaaacacacccattgaacca
cagtcaccacaagatttcactcaaacgtttggggaaatcgatcctgatcagcctccacca
ccagggcttgagatggaaactgtagtggttcctaaagtacaaagggatatgaaacctaga
ctgatgcacaacgcaaaaaaacttaaggaatatccaatagttaataaaggcaaagaaatg
tctggattatgttcaattatgtaa
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integrated database retrieval system
