Rhopalosiphum maidis (corn leaf aphid): 113550453
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Entry
113550453 CDS
T06065
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03030
DNA replication
rmd03420
Nucleotide excision repair
rmd03430
Mismatch repair
rmd03440
Homologous recombination
rmd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113550453
03420 Nucleotide excision repair
113550453
03430 Mismatch repair
113550453
03440 Homologous recombination
113550453
03460 Fanconi anemia pathway
113550453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rmd03000
]
113550453
03032 DNA replication proteins [BR:
rmd03032
]
113550453
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113550453
Transcription factors [BR:
rmd03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
113550453
DNA replication proteins [BR:
rmd03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
113550453
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
113550453
MMR (mismatch excision repair)
113550453
DSBR (double strand breaks repair)
HR (homologous recombination)
113550453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
113550453
NCBI-ProteinID:
XP_026808083
LinkDB
All DBs
Position
1:6005704..6008721
Genome browser
AA seq
608 aa
AA seq
DB search
MEYEKMLTKGALKSIMNNEDVKDPVMQVLGVRKITAAGANERYRLLISDGHNLNSFAMLA
TQLNGMVTSGELNEFSILQIKRHIISNLTDRSKGSKQVMILIDLAVMVPGDLVGSKIGDP
KPIIDNSGQVVENGISASDSTPQSNSLPKPRSVQASVIDNGLQRDIDVSNIHPINSLSPY
QNKWTIRARVINKGPIRTWSNQRGEGKLFSMDLLDESGEIRATAFNSECDKFFDMVEVNK
VYFITRGSIKTANKKFSNLNNDYELTLSSETQIFPCHDFDDSQMPALKFNFVQLSQVKDV
DVDGIVDVIGVCQTAGELTKLMSKTTRKELKKRDVTIVDQSLSSVTITLWDTQAEDFDGS
LQPVIAIKGSRIREFMGSKSLSLSGSTVMQINPDIEEAHRLRGWYDSLPSNVEFNSISTR
SDAGANSQFLTIKGAQLAQLGSGDKADYYSMYSHLIFVKSESALYKACPKPDCQKKVIDR
NDGTYRCEKCNDETENFKYRLMLSAQLSDSTGNQWVTMFQETAENLLGTTSAELGRLMEE
SKEEYSDVFQRQMFKLFEIRARAKMETYNNETRLKVSLVNIKPIDYKVASTKLIADIKRL
SGISTSVM
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaatacgaaaaaatgttaacaaaaggcgcattaaagtccattatgaacaatgaagat
gttaaagatccagttatgcaagttctcggtgtaaggaaaattactgctgcaggagcgaat
gaaagatatcgcttacttatttctgacggtcataatttaaattcttttgctatgttggct
actcagttaaatggtatggttacttccggagagcttaatgaattttcgatcctacagata
aaacgtcatataatcagtaatttaactgaccgttcaaaaggaagtaaacaagtcatgatc
cttatagatttggctgttatggtacctggtgatcttgtgggttcaaaaattggtgatcct
aaaccaataattgataattctggtcaagtagttgaaaatggtatttctgcttcagactct
acaccccagtctaattctttgccaaaaccacgttctgttcaagcaagtgttatagataat
ggtcttcaaagagacattgatgttagcaatattcatcctattaattctctaagcccatat
caaaataaatggacaatcagagctagagttataaacaagggcccaattcgtacttggagc
aatcaaagaggtgaaggtaaactttttagcatggatctacttgatgaaagtggtgagata
cgtgcaactgcctttaacagtgaatgtgacaaattttttgatatggttgaagtaaataaa
gtatacttcataactcgtgggtcaattaaaacggcaaataaaaagttttcaaatttaaat
aatgattatgaacttacactttctagtgaaacacaaatttttccatgtcatgactttgat
gattctcaaatgcctgctctaaaatttaattttgttcaattgagtcaagttaaagatgtc
gatgttgatggtatagtagatgtcataggagtttgtcaaactgctggagaattgactaag
ttaatgtcaaagactacaagaaaagaattaaaaaaaagagatgtgactattgttgaccag
tctttaagttcagtaactatcacattatgggatactcaggcagaagattttgatggatca
ttacaacctgttattgctataaaaggaagcagaatcagagaattcatgggtagcaaatca
ttgtcactttcaggatcaactgtaatgcaaataaatcctgacatagaagaagcacatcgc
ttaagaggttggtatgattcacttccttcaaatgttgaatttaatagtatttctactcgt
tctgatgctggagcaaattctcagttccttactattaaaggagcacaacttgctcaactt
ggtagtggagataaagctgattattatagtatgtactcgcatttgatttttgtgaaatct
gaatctgccctgtataaagcatgcccaaaaccagattgtcaaaaaaaagttattgatcgt
aatgatggaacatatcgttgtgaaaaatgtaatgatgaaactgaaaatttcaagtataga
ttgatgctttcagcacaattgagtgactcaactggaaaccagtgggtaactatgttccaa
gaaacagctgaaaacctcttgggcactactagtgcagaattaggaaggttgatggaagag
tctaaggaagaatatagtgatgtttttcaaagacaaatgtttaaattatttgaaattaga
gctagagcaaaaatggagacgtacaataatgagactaggttaaaagtatctttagtaaat
ataaaaccaattgattataaagtagcttctacaaaattgattgctgatattaaaagattg
agtggaatttcaacatcagtaatgtaa
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