Rhopalosiphum maidis (corn leaf aphid): 113550613
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Entry
113550613 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04137
Mitophagy - animal
rmd04140
Autophagy - animal
rmd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113550613
04137 Mitophagy - animal
113550613
04148 Efferocytosis
113550613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rmd03000
]
113550613
Transcription factors [BR:
rmd03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113550613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
PAS_9
PAS_4
HIF-1a_CTAD
PAS_2
DUF2160
Motif
Other DBs
NCBI-GeneID:
113550613
NCBI-ProteinID:
XP_026808358
LinkDB
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Position
1:63270132..63320204
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AA seq
936 aa
AA seq
DB search
MENKKPKEKRRNSERRKEKSRDAARSRRSKETEIFTDLGSALPLPASVISQLDKATIMRL
TIASFKIMDALSSTNINVKPDEKDSPPNMSGICNKALDGIVLITTADGDIIFISENISSY
LGLSQIDLIGQSIYEFAHLCDQAELKDILTNKDIGEQKSFFVRMKCTLTNKGRNVNLKSA
SYKVLHFTGHSVINTCARIKSSVLSGGESDSDYESDKKIDSDSKSINSDSKFEKTYNDSP
SHIFVSIAEPIPHPANIEIPLYKQSKIFFSKHSLDMKYIIADDVITNYVGYEPDSLVAKS
VFDYFHAQDCNSVEKSFKILFEKGQVETNRYRFLSKGGGYVWIVTQATILNDHKGLKPES
IMCINYVISGVEHGDEIYSLCQLSPVICKPAIQDKPSSPQKQKQQKQQPQQLKQQPSTSA
KRPSSTEKVFKPKCLVDSSTFLLPAGNGPVYLDVNGDGKPRTASQSTTSTASVIKKKPES
CLESPKATTAKIFAPRTEDMNKGFLTFSDDDTGLTMLKDEPEDLTHLAPTAGDVCVPLDT
CGLGHLGLFMSDVLDDLILTDCSLAPFDSLPAPPSLHDAYSSASRSSPPMHHLHHHHLHH
GDELSQHAVTDLCDPTMSSLLGMDLDNSPNDLDLDLSLKNQFIPLYEDDLYPLLSDDLLW
GSGDRSPSPKPSPNAVNHHDGSSNNNWHVPTTEDIVGKNSIDRDAPPSPSLAKLLQKTDA
DALPCRQQHFDSGGSLLHMDGGDSWGSISKMLHQRYNSGGSSGSEPTTAVTDQCHNQHNP
LRQQQPQPQQQLDCNGSAAGRANSGGIKRTGPNATAAAAPSTWKRCRQEETAKQGASNSV
LMNLLVSGCDDDAGKSMIGKNSMVKDGSQPRHRSRLKAASCLLDPGSSSIPSLMDLTAHD
YDVNAPAGGVLLQGSELLKALEIGGGGSGGGNIAVA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaaaaaacccaaagagaagcgaagaaattctgagagacgaaaagaaaaatca
agggatgcggctcgatctagacgtagtaaagagaccgaaatatttacagatctcggatca
gcattacctttaccagcatccgttattagtcagttagataaagcaacaattatgcgattg
actattgcatctttcaaaattatggacgctttatcatcaacaaatattaatgtaaaaccc
gatgaaaaagatagtcctccaaacatgagtgggatatgcaacaaggcattggacggtatt
gtattaattaccacggctgacggagatataatattcatatcagaaaatatttccagctac
ttaggattatcacagattgatttaatcggacagtcaatttacgagttcgctcatctttgc
gaccaagctgaattgaaagatattttaactaacaaagatattggtgaacaaaagtcgttt
tttgttcgaatgaaatgcactcttaccaataaagggcgcaatgtaaatttgaaatcagca
tcatataaggtgctgcattttacaggacattcagttatcaacacttgtgccagaataaaa
tcatcagttttatcaggtggagaatcagattcagactacgaatcagataaaaaaatagat
tctgatagtaaatctattaatagtgattcaaagtttgaaaaaacttataatgattctcca
tctcatatatttgtgtcaatcgctgaaccaataccacatccagcaaatattgagatacca
ttatataaacagagcaaaatatttttcagcaagcattcattggatatgaaatatataatt
gctgatgatgtcataacaaactatgtgggttatgaacctgattcattagttgccaaatct
gtgtttgattatttccatgctcaagattgtaattcagttgaaaaaagttttaaaatatta
ttcgagaaaggacaggtagagacaaacaggtatcgatttttgtcaaaaggaggtggttat
gtttggatagttacacaagcaaccatactaaatgatcacaagggtctaaaacctgagagc
attatgtgtattaattacgtaattagtggcgtggaacacggcgacgagatctactcactg
tgccagctatcaccggtcatctgcaagcccgccatccaggacaaaccgtcgtcgccgcaa
aagcaaaaacagcaaaaacaacagccgcaacaactgaaacagcaaccctcaacttctgcc
aaaagaccgtcatccacggaaaaagtgttcaagcccaagtgtttggtggattcttccacg
ttcttattgccggcaggcaatgggccggtttatctggacgtgaacggtgacggtaagccg
agaaccgcatcgcagtcgactacatctaccgccagtgtcataaaaaagaaaccagaatcg
tgtttggagagcccgaaagctacaacggccaagattttcgccccgcggaccgaagacatg
aacaaggggttcctgacgttttcggatgacgacacgggactgaccatgctcaaagacgaa
ccggaagacttgactcatctggccccgacggctggtgacgtgtgcgtgcctctggacact
tgtggtctcgggcatcttggcctgttcatgtccgatgtacttgacgacctcatactcacc
gactgttcgttggcgccgttcgactcgttgccggcgccgccgtcgctgcacgacgcatac
tcttcggcttcccggtcgtcaccgccgatgcaccacctacaccaccatcacctccaccac
ggcgacgaactgtcgcagcacgccgtcaccgacctgtgcgatccgaccatgtcctcgctg
ttgggcatggacctggacaacagccccaatgacttagacttggacctgtcgctcaagaat
cagttcatacccctgtacgaagacgacctgtacccactgttgtcggacgatctgctgtgg
ggcagcggtgacagatcgccgtcgccaaaaccgtcgccgaatgcggttaatcaccatgac
ggcagtagcaacaacaactggcatgtgccaacgacggaagatatcgttgggaaaaattcg
attgacagagatgcgccgccgtctcctagcctggccaaattgttgcagaagactgacgcg
gacgcactgccttgcaggcaacagcactttgatagcggcggtagcctcttacacatggac
ggtggtgattcgtggggatcgatcagcaaaatgttacaccaacggtataactcgggcggt
tcctccgggtccgaacctacaacggctgtgacagatcagtgccataaccaacacaacccc
ctacggcaacaacaaccacagccacagcaacagttggattgtaacgggtcggcagcaggc
cgggccaatagcggtggtatcaagcgaactgggccgaatgccaccgcggctgcagccccg
tcgacgtggaaacggtgtcgtcaagaggaaacggctaaacagggtgcttctaacagcgtg
ttaatgaacttgctggtcagcggttgcgatgacgacgcgggaaaatcaatgatcggcaag
aactctatggtgaaagacggttcgcagccaaggcacagatcgaggctaaaggccgcctcg
tgcctattggacccaggcagctcttccataccatcgctgatggacttgaccgcacatgac
tacgatgtgaacgccccggcaggtggtgtactgctccagggatcggaactcttgaaggcc
ctggaaatcggtggcggcggaagtggtggcggaaacatagccgttgcatag
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