Rhopalosiphum maidis (corn leaf aphid): 113550654
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Entry
113550654 CDS
T06065
Name
(RefSeq) endoribonuclease Dcr-1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113550654
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
113550654
microRNA pathway
RISC loading complex
113550654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dsRBD
Dicer_platform
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
113550654
NCBI-ProteinID:
XP_026808418
LinkDB
All DBs
Position
4:complement(13104565..13114316)
Genome browser
AA seq
1841 aa
AA seq
DB search
MALTFGDNIHTKTFTPQEYLVEVLSSAKNKNVIISLGGITNKVFVILNLIRELAFKIHRK
FEKKKWTLLILEETEIDQYMFSIRHLTNLKPLLIKSFNHLNFNNYEVIVITENQCLEMLE
KNYIDFDQLNLVIFNNCQKITVKNSTYFKICNFIKANSKCRILGIVHPLFEFDSDPFFIE
DQMKFISNKLFSSIETASDIVSILRHCCKPKEVLIECAVQTEDVINTTIKSMVQSLTEFL
NDHNFEPAIIYEDDEEYGEELKQITHPKNEPLQMIADFLDVLKTMGPYCADKAALTLLYM
VEKLKVKTKYERHYILLCIVSTLLIQIRATFDDIFYNYSNIDKILKFSSPRVLRIINILK
QYKPKSFRADNNNVEVCNDQKEKKDRTLKSKSVRRNWKLARRYGTHRKQGRSRDQYEETV
CAIVLVNNKMTASILYYLFLDLKNSNKEDFGWIQPQYTVDKEADPITEPKEFEIEHKKQE
ETLRRFRQRECNVLIGTKVLEAGIDLPRCNLVINYNIPLSYKSYLRSKSRAKTLDAHYIL
MFDENATSSILSCLKLYKDINKMLLSHCALKDINMENEIYADRYNWCVTPFKPGKKEDSA
FVDMASAIGLVNRYCAKLPSDTFTKLSPIWKIQSVIYENQPMFVCSIRLPINSPIKHDIH
GHPMPCEILAKRIAALEVCRQLHSHGELDDTLQPITKESFHALFNADEVLPDAEDSLIPW
DTEEPRPGTNKRRQYYYKRIAEALNDCRPVEGKPCHLYAILLNMNCPVPEEQNTRGRRIH
PPEESVHGFGILTTKHIPSIPPFPIYTRCGEVYVSLKPIKTNMLLTQHQLNDIATFLNYT
FTNVLRLQKCHVAFDPTTTHNCYYIVPTLRDTSGSIDIDWNFLDNMHKCKDTKLSIITNE
DRINFQPDIEVLKDAVVTPWYRNQEQPQYFYVAEICTHLNPKSPFPGSIENYKTFEDYYN
LKYNLKIQNLEQPLLDVDHTSARLNFLTPRYMNRKGVILPTSSDATKRAKRDNLSQKQIL
VPELCNVHLFPASMWRKAVSLPCILYRINALLLADEIRTIVAKDISLGSLNLSFDHIWEP
LDFGWTMKDVLIKRKEQKENSVVKIVEPVEIVKHFVVEEINEEKVDKSNDPNWMDIGTWS
NDMADFAMNNIDNTTNVRYSSPTSWMVQSDNESSTFSDTDSDDEIQVDGLHSNGLRIEFK
NTYLAEAVDENDSKTNKLFFFKNNETNENSWIWNENCHFVPNYNSNEIDKQITNLLYKKD
DEIIINREVKSCTNIDSSSLLKLPWELNSDTGYGLPDINILSNNTSFVPKDKKCIKNGVH
LNNKAIDNINRVHDTQNETFSFDFQPDLNNHPGPSPSVLLQALTMSNANDGINLERLETI
GDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHD
NWLPPCYFVPHKLEKALINASIPTSLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDLE
NTPLFVPYNLVTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPSLDDSK
LGYLKPPSSPLLRNVHDPEGELAKLMNGFESFEQHLGYRFQDRSYLLQAMTHASYHPNRL
TDCYQRLEFLGDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVRNGFHKY
FKHLSPGLSEVICRFVTIQEENGHTIDEEFYFLGEDDCEEAEDVEVPKALGDVFESVAGA
IYLDSNMSLDTVWKVYHKIMENEMEQFSKNVPKSPIRELLELEPETAKFSKPEKLADGRR
VRVIVEIFGKGEFKGIGRNYRIAKCTAAKCALKHLKKKIKK
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaacatttggtgataatatacatactaaaactttcactcctcaagaataccta
gttgaagttctaagttcagctaaaaacaaaaatgtaattatttcattaggaggtataaca
aataaagtatttgttattttgaatcttattcgagaacttgcctttaaaattcacaggaaa
tttgaaaaaaaaaaatggactttactaattttagaagaaacagaaattgatcaatacatg
ttttctatccggcatttgaccaatttaaaaccattattgattaaatcattcaatcatttg
aattttaataactatgaagtaattgttattactgaaaaccaatgcttagaaatgcttgaa
aaaaattatatagattttgatcagctgaacttagttatattcaataactgccagaaaata
actgtgaaaaatagtacttattttaagatttgtaactttatcaaggctaatagcaaatgt
agaattttagggattgttcatccattatttgaatttgattctgatccattcttcattgaa
gatcaaatgaaatttatatcgaataaattgttttcatctatcgagactgccagcgatatt
gtttctattttacgccactgttgtaaacctaaagaagttctcattgaatgtgctgttcaa
acggaagatgttatcaatactacaataaaatctatggtacaaagcttaactgaattttta
aatgaccataactttgagcctgctatcatatatgaagatgatgaagaatatggtgaagaa
ttaaaacaaataactcaccctaaaaatgaacccttacaaatgatagctgattttttggat
gttttaaaaacaatgggtccatattgtgcagataaagctgctttgacacttctatacatg
gtagaaaaattaaaagttaaaacaaaatatgaaagacattatattttgctgtgtattgtt
tctacattattgattcaaataagagcaacgtttgatgatattttctataattatagtaat
attgataaaattcttaaatttagttcccctcgtgtgctacgaattattaatattctcaaa
caatataaaccaaaatcttttagagcagataataacaatgttgaagtgtgtaatgatcaa
aaagaaaaaaaagataggaccttaaaatctaaatcagtaagacgtaattggaaattagct
agaagatatggaactcatagaaaacaaggacgatcaagagatcaatacgaagagactgtt
tgtgctatagttcttgtaaacaacaaaatgacagcttctattttgtactatttgttttta
gatttgaaaaatagtaataaagaagattttggttggatccaacctcaatacacagtagat
aaagaagcagacccaattactgaacctaaagaatttgaaattgaacataaaaagcaagaa
gaaactttaagaaggtttcgacaaagagaatgtaatgtacttattggaactaaagtatta
gaagcaggaattgatttacctcgatgtaatttagtaattaattataatataccactttca
tataaatcctatttaagatctaaaagtagggcaaaaacattagatgctcattatatttta
atgtttgatgaaaatgctacttcaagtattttatcttgtttaaaactttataaagacatt
aacaagatgttattaagtcattgtgctttaaaagatattaacatggaaaatgaaatctat
gctgatagatataattggtgtgttacaccattcaaaccaggaaaaaaggaagattcagca
tttgtggatatggcatcagccattggtcttgtaaacaggtactgtgcaaaactacctagt
gatacttttaccaaattatctccaatttggaagatacaatcagtaatatatgagaatcaa
ccaatgtttgtctgtagtattcgacttccaatcaattcaccaattaaacatgatatacat
ggtcatccaatgccatgtgaaattttagcaaaaagaatagctgcattagaagtgtgtaga
caattacattctcacggtgaactagatgatacccttcaacctattacaaaagaatcattt
catgctttgttcaatgctgatgaagtactgcctgatgctgaagattccttaataccttgg
gacactgaagagcctagaccgggaacaaataaacgtcgccaatactactataaaagaatt
gctgaggcactgaatgattgtagaccagttgaaggcaagccttgtcatttgtatgctata
ttattaaatatgaattgtcctgtgccagaagaacaaaatactagaggtcgaagaattcat
ccacctgaagaatctgttcatggttttggtatacttacaacaaaacatattccaagtatt
ccaccatttcctatatatactcgatgtggtgaagtatatgtcagtctaaagccaattaaa
acaaatatgttgctaacgcaacatcaattgaatgatatagccacatttttaaattataca
ttcaccaatgtactacgtttgcagaaatgtcatgtggcatttgatccaactactactcac
aattgttattatattgtgccaactttaagagatacaagtggatcaatagatattgattgg
aatttcttagataatatgcataaatgtaaagatactaaactaagtattataactaatgaa
gatagaataaattttcaacctgatattgaagtattaaaagatgctgttgttacaccttgg
tacagaaaccaagaacaacctcagtatttctatgtagcagagatttgtacacatctaaat
ccaaaatcaccattccctggttctatagaaaactataaaacatttgaagattactacaat
cttaaatataatttaaaaatccaaaatcttgaacaacctcttttagatgtggaccatact
tcagcaagattaaattttctaacaccaaggtacatgaatcgtaaaggtgtaattttacct
acaagtagtgatgcgactaaaagagctaaacgagataatttaagtcaaaaacaaattctt
gttcctgaactttgtaatgtacatttatttccagcatcaatgtggcgtaaagctgtttct
ttaccatgtatattgtaccgtattaatgctctattgttagctgatgagattcgtactatt
gttgccaaggatatatctttaggatcgcttaacttaagttttgatcacatctgggagcct
ttagattttggctggaccatgaaagatgtattaataaaaagaaaagaacaaaaagaaaat
agtgtagtaaaaattgtggaaccggttgaaattgttaaacattttgtagttgaagaaata
aatgaagaaaaagtagataaatcaaatgaccctaattggatggatataggaacatggtct
aatgacatggctgattttgcaatgaataatattgataatacaacaaatgtaaggtattcg
tctccaactagttggatggttcaaagtgataatgaatcaagcacatttagtgatactgat
tcagatgatgaaattcaagttgatggattacattcgaatggtttgcgcatagaatttaaa
aatacttatttagctgaagctgtcgatgaaaatgattccaaaacaaataaattatttttt
ttcaaaaacaatgaaacaaatgaaaattcatggatttggaatgagaattgtcactttgta
cctaactataattctaatgaaatagataaacaaattacaaatttattgtataaaaaagat
gatgaaataattattaatcgagaagtaaaaagttgtactaatattgatagctcatcttta
ttaaaattaccatgggaattaaattcagacactggttatggacttccagacattaatatt
ttatcaaataacacttcatttgtgcctaaagataaaaaatgtattaaaaatggagtacac
ttaaacaataaagcaattgacaatatcaatagagttcatgatacacaaaatgaaacattt
agttttgactttcagccagacttaaacaatcatccaggaccaagtcctagtgttttacta
caagcattaactatgtcaaatgcaaatgatggaattaatttagaacgtttggaaacaata
ggagattcatttttaaaatatgctatcacagcttacttatactgtactcatgataatgtt
catgaaggaaaactgagccatcttagatcgaaacaagtcagtaatttgaatttgtatcgt
ctaggtaaattaaaaatgtttggcgaacgtatgatatctacaaaatttgaacctcatgat
aattggctaccaccctgttactttgtgcctcataaattagaaaaagctcttattaatgct
agtataccaacttcattgtggaatatgataacacttcccacatttaaggatcctacagat
aaagaaattgaagaagttatccaacagttcaaagtgggcttctcaaatgaggacttagaa
aatactcctttgttcgtgccttacaaccttgttactcaacatagtattcccgataaaagt
attgctgactgcgtagaagctttaattggtgcttatttgatatcttgtggagctcgtgga
gcattattatttatgtcttggctaggaataagagtattaccttcgctagacgattcaaaa
ttaggttacctcaaaccaccatcttctccattattacgtaatgttcatgatcctgaaggt
gaattagcaaagttaatgaatggatttgaatcttttgaacagcatttaggataccgtttt
caagatcgtagttatctattacaagcaatgactcatgcttcttatcatcccaatcgttta
actgattgttaccaacgattagagtttctgggtgatgcagttttagattatttaattacg
cgacatttatatgaagataaaagacaacattcacctggagctttgacagatcttcgttca
gcactagtcaataatacaatttttgcatccttagctgttagaaatggttttcacaagtat
tttaaacatttatctccgggtttgtctgaagttatttgtagatttgtaaccatacaagaa
gagaatggtcatactattgatgaagagttttatttcttgggagaagatgattgtgaagaa
gctgaagatgttgaggttccaaaagcccttggcgacgtttttgaatcggttgccggagca
atttatttggatagtaatatgtcattagatacagtgtggaaagtttatcataaaataatg
gaaaatgaaatggagcaatttagtaaaaacgtaccaaaatctcctatcagagagcttcta
gaattagaaccagaaactgctaaatttagcaaacctgaaaaattggcagatggtcgacga
gtcagagtaatagttgaaatatttggcaaaggagaatttaaaggtattggtcggaattat
agaattgctaaatgcactgcagccaaatgtgccttaaagcatttaaagaaaaagataaag
aaataa
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integrated database retrieval system
