Rhopalosiphum maidis (corn leaf aphid): 113550661
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Entry
113550661 CDS
T06065
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113550661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113550661
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113550661
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113550661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113550661
NCBI-ProteinID:
XP_026808432
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Position
4:complement(13669373..13675262)
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AA seq
694 aa
AA seq
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MYKSIKHNMKGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYEADLKKEIKKLQRL
RDQIKSWIASAEIKDKSALLDYRKLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQ
KEREEISAWLTQSIESLNIQIDQYECEMESLLVGKKKRLDKDKQEKLDELKARVERHRFH
IRKLETVLRMLDNMSVEVKKIRSIKDDVEYYIEASHEEDFMHNDDLYDEIIGLAELELGV
AANNSAEANGSPTSQTASLSGSCPASPAPMSHNHSIEEPVSVAVVTTSTPVSITTIATIS
ESIPMISAVSTVVTTATSASIVAAPVRKKKEETTKNAIKPTPVKANPSNNANSTVNSKGP
TIAAVVKSSVSNHTTTTSSVSTVSQSITTQTSTTTVGNFATVAASNIHNKHAQAQSVENT
SVVSSIPTSPSSYHTNVSTAQGNVNNSDSVVNCVSTTPSSLSSTTSPVQVDSHTALSSLK
TIAQKAIDQAGIDISQQSTDTKSLSSNIVQNSSSHLSLQQQPSQQPPVLFEAKISPLLGV
APLGPVPLSKDHQFQFTMLESAFVHLPHPSDSERIKLYLPRNPCTTPHYYNQGPLPHSDS
LEFFQRLSTESLFFIFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKLINEEY
EQGTYIYFDYEKWGQRKKEGFTFEYKYLEDRELN
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtacaaatcaataaaacacaatatgaaaggtgaaattgatcggtgccttaagaaagtt
accgaaggtgttgaaacatttgaggatatttggcaaaaagttcataatgctacaaatagt
aatcaaaaagaaaaatatgaggctgacctcaaaaaggaaatcaagaaattgcagaggtta
cgcgatcaaatcaaaagctggattgcgtccgcagaaattaaggataaaagtgctttactt
gattaccgcaaacttatagaaacccaaatggaaaggtttaaagtagtcgaacgagaaaca
aagactaaagcttattctaaagaagggttgggtgctgcccaaaaactagatcctgctcaa
aaagaaagagaagaaataagtgcatggttaacacaatcaattgagtcgctcaatattcaa
attgaccaatatgaatgtgaaatggagtctttacttgttggaaagaaaaaaagattggat
aaagataaacaagaaaaactagatgaacttaaagcaagagtagaacgacataggttccat
atacgaaaattagagactgtgctaagaatgttagataatatgtcagtggaagtcaaaaag
attcggtcaataaaagatgatgtagaatattatattgaagcctcacatgaagaggatttt
atgcataatgatgatttatatgatgaaataattgggttagctgaacttgaattaggagtt
gctgcaaataattctgcggaagcaaatggatcacccactagtcagactgcaagtcttagt
ggttcttgtccggcatctcctgctccaatgtcacacaatcattccatcgaagaaccagtt
tcagtggctgtagtaacaacttctacaccagtatcaataacaactattgctacaatcagt
gaatcaattccaatgatctctgcagtatctacagttgtaactactgctacttcagcttct
attgttgcagcaccagttcgcaaaaaaaaagaagaaactactaaaaatgcaattaaacca
acccctgtgaaagcaaatccttcgaataatgctaattctacggtgaacagtaaaggtcca
actatagctgctgttgttaaatcatctgttagtaatcataccaccacaacatctagtgtg
tctactgtgtctcaatctataactactcaaacaagtactactactgtcggtaattttgct
actgtagcagcttcaaatattcacaataagcatgcacaagcacaatctgttgaaaatacg
tctgttgtttcatctataccaacttctccatcatcttaccatacaaatgtgtcaactgca
caaggaaatgtgaataattctgatagtgtggtaaattgtgtgtctactacaccttcgtca
ttaagttctacaacatcaccagtacaagtagattctcatacagctctatcatcattaaag
actattgcccaaaaagctattgatcaagctgggattgatatatcacaacagtctactgat
actaaaagtttgagttcaaatatagttcaaaattcaagtagtcacctaagcttacagcaa
caaccatcacaacagccacctgttttgtttgaagctaagatttctcctttattaggagta
gctccactgggtccagtgccactttctaaagaccatcaatttcaattcacaatgcttgag
tctgcatttgtacatttacctcatccgtcagattctgaacgaataaaattatatttacct
cgaaatccttgtacaacgcctcattattataatcaaggacctttaccccattctgacagt
ttagaatttttccaaaggctttcaacagaatcccttttttttatattctattacatggag
gggtctaaagcacagtatttagctgctaaggcattaaaaaaacaaagttggagattccat
acaaaatatatgatgtggtttcagcgacacgaagaacctaaattaattaatgaagaatat
gaacagggcacctacatttattttgattatgaaaaatggggtcaacggaaaaaagaaggt
ttcacgttcgagtataagtatctggaagatagagaattaaattga
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