Rhopalosiphum maidis (corn leaf aphid): 113552553
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Entry
113552553 CDS
T06065
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113552553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113552553
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
113552553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Cellulase
Orthopox_B11R
Herpes_UL20
Motif
Other DBs
NCBI-GeneID:
113552553
NCBI-ProteinID:
XP_026811215
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All DBs
Position
4:29211548..29217832
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AA seq
739 aa
AA seq
DB search
MSDFKTVIEGTRASNNLPNGVNWNFYNSYPKFKKAVSSRQNHVLKLISALLKNQKIPGNI
RDKDEDHQFELIEEGNDTILDRVTHNIDTLNGSFKNVGVSVTPKTFVSESTDNTQAVNKK
RILVHGRNIERPQIKFKIKVDNRPVPFKPLLTSKPNSKTPLDICLETNEDGIMFYKHPYQ
LELEEFKVSAEYLKVSKAVKPASLEDTKFVEVYTEEQLNLMISDLENVKELAIDLEAHSY
RTYQGFTCLMQISTRNADYIIDTLHLRDKLHVLNEIFTNPDVVKVFHGADSDILWLQRDL
GLYVVNMFDTYQAAKILNFSRKGLDFLLKHYCNVDADKAFQLYDWRTRPLSTEAIFYARS
DTHYLLYVYDMIKKDLMAISTNQCNYIELVFQRSADVCKMRYEVNILGDDSHLSMYKRSK
KMFDIQQMYALKHIYAWRDKLARELDESPGYILPNHMLLKISEMLPKESFGILACCSPIP
PLVRQCLHEIHYIIKKAREQTFENQTEKLSEDKSFTQDVVKHIDVDMISLHDYSKSKENA
GDSLPTLLNDLNKLVDDEIEIVYFTPKEITIFQEINKKSRKHTGLTNIVYKQPYELYLKT
IKYNNVLKKSLEIKEKISENNEPMNVSIPMECPDKLYLTTQVKEIKKEIIDHTNVKKNIP
STIIREITIENQSSSTSSASQNSTNNSRQTNFKPHKYEHTDFAKFHNQSKEVMLISKRLQ
KKKNKIKKNKKPKRLQKTV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttaaaacagttattgaaggcactcgagcctctaacaatttgccaaatgga
gtgaactggaatttttataatagttaccctaaatttaaaaaagctgtttcatcacgtcaa
aatcatgttctcaagttaatatctgcgttattgaaaaatcaaaaaatccctggtaatatt
cgagataaagacgaagatcatcaatttgaacttattgaggaaggaaatgacacaatctta
gaccgagtgactcacaatattgatacattaaatgggtctttcaagaatgtgggtgtatct
gtcacccccaaaacttttgtatcagaatctactgataatacacaagcagtaaacaaaaaa
agaatattagtacatggacgtaatattgaaagaccacaaataaaatttaagatcaaagtt
gataatagaccagttccgtttaaacctcttcttactagtaaaccaaacagtaaaacacca
ttagatatatgtttggaaacaaatgaagacggaatcatgttttacaaacatccatatcaa
ttagaattagaagaatttaaggtttcagctgaatatttaaaagtttcaaaagctgtcaag
cctgcatcactagaagacacaaaatttgtcgaagtatatactgaagaacaattgaattta
atgatttctgatttagaaaacgtcaaagaattagctattgatttagaagcacatagttat
cgaacatatcagggatttacatgtttaatgcaaatatctactagaaatgcagattatatt
atagatacattacatcttcgtgacaaattgcacgtactcaatgaaatatttactaatcct
gatgtagttaaggtatttcatggagcagatagtgatattctatggctgcaaagagatctg
ggtctatatgttgtaaatatgttcgatacatatcaagctgcaaaaatattgaacttttct
agaaaagggttagatttcttactaaaacattattgtaatgtagatgctgacaaagcattt
caactgtatgattggagaacaagaccattatcgactgaagccatattttatgctcgttct
gatactcactatttactttatgtgtatgatatgatcaaaaaagatttaatggcgatatct
actaatcagtgcaactatattgaattagtatttcaacgaagtgctgatgtgtgcaaaatg
aggtatgaagtgaatattttaggcgatgacagtcacttaagtatgtataaacggagtaaa
aaaatgtttgacatccaacaaatgtatgcattaaaacatatatatgcttggagagataaa
ttagccagagaattagatgaaagtccaggatacattttaccaaatcatatgttacttaaa
atatcagaaatgttacccaaagaatcatttggcatactggcttgttgttcgccgataccg
ccattggttcgacaatgtctacatgaaatccattacataattaaaaaagcaagggaacaa
acttttgaaaatcagaccgagaaattgagtgaagataaaagctttacacaagatgtggtc
aaacatatagatgttgacatgattagcttacatgattattctaaatcaaaagaaaatgca
ggagactcattaccaacattattaaatgatttaaataaattagttgacgacgaaattgaa
attgtttattttacaccaaaggaaattactatattccaagaaataaacaaaaaatcaaga
aagcatactggtttaacaaatattgtttataaacagccatatgaattgtatttgaaaaca
attaagtataataatgttcttaagaagtcattagagataaaagagaaaataagcgaaaac
aatgaaccaatgaatgttagtatcccgatggaatgtccggacaaactttatttaaccact
caagttaaagaaattaaaaaagaaattattgaccacacaaatgtaaaaaaaaacattcca
agcacaattataagagagataacaatcgaaaatcagagttctagtacgagttcagcttcc
caaaactcaactaataattcaagacaaaccaattttaagcctcataagtatgaacatact
gattttgccaaattccacaatcaatcaaaagaggttatgttaatttctaaacgattacaa
aagaaaaagaacaaaataaagaaaaataaaaagccaaaaagattacaaaaaactgtataa
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