Rhopalosiphum maidis (corn leaf aphid): 113553128
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Entry
113553128 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113553128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113553128
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113553128
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113553128
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113553128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_4
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
113553128
NCBI-ProteinID:
XP_026812095
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All DBs
Position
2:48448126..48451938
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AA seq
280 aa
AA seq
DB search
MELLVAGFDDIKFNVEIALDEQHGALPLPFNGMDKSIAAVCSFYPKGXCSKGALCPMRHV
RGDRTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYARFNACHNKECPFLHIDPESK
LKDCPWYDRGFCRHGPHCKHKHVRRVLCMNYVSGFCPDGPNCKFVHPRFELPAYQQYDAN
QKDSKKLVVICHFCGDTGHKAMYCHKMVSDLVKIKPELEVNNEPLPTNAQAGFSRKLKPL
EEVTCYKCGFKGHYANKCPKGHLAFLSLQQNQALQNNQGA
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggagttgcttgtggcaggatttgatgacattaagttcaatgttgaaatagctttagac
gaacaacatggagctttacctctgccgttcaatggaatggacaaatctatcgctgcagtt
tgttcattttatcccaagggantctgttctaaaggagcattgtgtccaatgagacatgta
cgaggtgatagaaccgttgtttgtaaacattggttacgtggtttgtgcaaaaaaggggat
cagtgtgaattcttacatgaatatgacatgactaaaatgcctgaatgttatttttatgct
cgatttaatgcatgtcataacaaggaatgtccatttttacatattgatcctgaaagtaaa
ttaaaagactgtccatggtatgatcgaggattttgtcgccatggcccacattgtaaacat
aaacatgttcgccgagtactctgtatgaattatgtgtctggattttgcccagatggtcca
aactgtaaatttgttcatcctcgatttgaacttccagcatatcaacaatatgatgctaat
caaaaagattcaaaaaaacttgtagttatatgtcatttttgtggtgacacaggacataaa
gctatgtactgtcataaaatggtatcagatcttgtaaaaattaagccagagctggaggtc
aacaatgagccattgccaacaaatgctcaagctggattttctagaaaattgaaaccttta
gaagaagttacatgttataagtgtggatttaaaggtcattatgcaaacaagtgtccaaag
gggcatttagcttttttgtctttgcaacagaatcaagcacttcaaaacaaccaaggtgca
tga
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