Rhopalosiphum maidis (corn leaf aphid): 113553385
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Entry
113553385 CDS
T06065
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113553385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113553385
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113553385
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
MLKL_N
AAA_27
ACT_PSP_2
Motif
Other DBs
NCBI-GeneID:
113553385
NCBI-ProteinID:
XP_026812497
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Position
2:complement(77984972..77996991)
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AA seq
891 aa
AA seq
DB search
MSKKPINHLNLDPEQQKIFVRFHKSLPDKPLTTVRFFNRQDYYTVHGQDATFAAKDFYKT
NHSIKIIGSDDDTLESLIFNKANFEAYIKQLLLVNHYKVEIFVNKGGKWALDYKGSPGNL
AQFEDLLFGNVEQIEANIVIALKLSPDFKNNKLIGLGAVDTVENKFQLSEFTDDEYFSHT
ESIVIKISPKECILMTDGSNPDVEQLKKVVERCGVLVTMKKKSDFSTDTLIQDLNKLIMF
EEGQQPNAHTLPQLQLEVASAAIAAVIKYLELSSDSDNLNQYTVDNLGYDKFVHLDSAGV
QALNLFSNSGTMSKNDSILGIFNKCRSPHGQRLLTQWIRQPLRDLNKINERLDIVETLVT
DTDIRQQLHDQHLRTIPDLQALMRKIQRKKANLQDCYRIYQAIQKLPDLVQTLSNSDNKT
LNSVITTPLKELVNDMNKYQAMIEETIDLKLVERGEFLIQSGFDDELQEMRNQMDDYETK
MKSNLTKTNGALGISVKLDSNSQYGFFYKVLLKDAKTVSNNKSYEVLDTTKGGGMRFRSS
KLTELNTEYQSIHKNYLEHQKSIVVEVIQTASSYNATILNLSRTLAQLDVLTSFSMLAAS
SLRPYVRPNLHPQGHGLLDLKQVRHPCVEVQDSVSYIPNDAYFEQGKCTFNVITGPNMGG
KSTYIRSVAVAVFMAHMGSFVPCDAAEISVVDAILARVGANDSQIKGLSTFMVEMIETVS
ILKRATSESLVIIDELGRGTSTYEGCGIACAIAERLATETKAFTLFATHFHELTKLQETI
PTITNKHVSAVTTDDSLTLLYQVQPGSCDKSFGIHVAAMAKFPKTVIQDAVKKLALLESF
QNNQITENNQKEINEADKEKFLIECKRCAQECTSSDDELFKRIKKLRTEFL
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaaccgatcaatcatttaaaccttgatccagaacagcaaaagatatttgta
cggtttcataaatcattacctgataaacctttaacaactgttcgttttttcaatcgacaa
gattattatactgtccatggtcaagatgctacttttgctgctaaagacttttataaaaca
aatcattcgataaaaattattgggtctgatgatgatacgcttgaatcattgatatttaat
aaagccaattttgaagcatacataaaacaactgttattggtcaatcattacaaagtagaa
atttttgtcaacaaaggtggaaaatgggctctagattataagggttcacctggtaactta
gctcagtttgaagatttactatttggaaatgtagaacaaattgaagcaaatatagttatt
gccttaaagctaagcccagacttcaaaaataacaagctaattggattaggagcagtagat
acagttgaaaataaattccaattaagtgaatttactgatgatgaatatttttctcacact
gaatcaatagttattaaaatttcgccaaaagaatgtattcttatgacggatggtagcaat
cctgatgtggaacaattgaaaaaagtagtagagcgttgtggagtgcttgtgacaatgaaa
aagaaatcagattttagtacggatacattgatacaagatttaaacaagctcattatgttc
gaagaaggacagcaaccaaatgcccacactttacctcaattacaacttgaagtggcttct
gctgcaatagctgcagttataaaatatctcgaactatcatctgattcagataacttaaat
caatatactgttgataatttgggatatgacaaatttgttcatttagatagtgctggtgtt
caagcacttaacctattttctaattctggtactatgtccaaaaatgattctattcttgga
atttttaataaatgtcgctcaccacatgggcaaagattgttaactcaatggatcagacag
ccattgagggatttgaataaaattaatgaacgcttagatattgttgaaactcttgttacg
gatacagatattcggcagcaactacacgatcaacatttacgcacaatacctgacctccaa
gctcttatgcgtaagattcaaagaaaaaaagccaacctacaagactgttataggatatat
caagcaatacaaaagcttccagacctcgtgcaaacattaagcaattcagataataaaact
ctgaatagtgtaattacaactccattaaaagaacttgttaatgacatgaataaatatcag
gccatgattgaggagacaattgatttaaaactggtcgaacgaggtgagtttctcattcaa
tctggatttgatgacgaactacaagaaatgagaaatcaaatggatgactatgaaacaaaa
atgaaatcaaatttaaccaaaactaatggggcattaggaatttctgtgaaattggattca
aattcacaatatggatttttctataaagtgttattaaaagatgctaagactgtctcaaat
aataaatcatatgaagttctagataccaccaaaggtggaggtatgcgttttcgatcatct
aaactaacagaacttaatacagaatatcagagtatacataaaaactatttggaacatcaa
aaatctattgtagttgaagtcatccaaacagctagtagttacaatgcaaccatactaaac
ttaagtcgaactctggcacagttggacgttttaacgagcttttctatgctggcagccagt
tcattacgtccatatgttagaccaaatttacatccccaaggtcatggtctgttagatttg
aaacaagtgaggcatccatgtgttgaggtacaagattcagtgtcttatatacctaatgac
gcttattttgagcaaggaaaatgcacatttaatgtaataactggtccaaacatgggcgga
aaaagtacttacattagaagtgttgctgtggccgtttttatggcacacatgggaagtttt
gtaccttgtgatgctgctgaaatcagcgtggttgatgctattttagctcgagttggagca
aatgattctcaaattaaaggattatctacattcatggttgaaatgatagagaccgtttct
atactcaaaagagctacttcagaatcgttagtaataattgacgaattaggtagaggtaca
tcaacttatgagggttgtggaattgcctgtgctattgcagaacgtttggctactgaaacc
aaagcatttactttatttgcgactcatttccatgagttaactaaactccaggagactata
ccaacaattaccaataaacacgtttctgccgttactacagatgatagtctcacgcttttg
taccaagtgcaaccaggatcatgtgataaaagttttggtattcatgttgctgctatggct
aagtttccaaaaaccgttattcaagacgctgttaagaagcttgctttgttggaaagtttt
caaaataaccaaataacagaaaataatcaaaaagaaattaatgaagctgataaagaaaaa
tttctgatcgaatgcaaacgctgtgcacaagagtgtacttcatcagacgatgaattattt
aaacgcataaaaaaattgagaactgagttcctataa
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