Rhopalosiphum maidis (corn leaf aphid): 113553699
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Entry
113553699 CDS
T06065
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmd03016
]
113553699
Enzymes [BR:
rmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
113553699
Transfer RNA biogenesis [BR:
rmd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
113553699
Prokaryotic type
tRNA splicing ligases
113553699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
113553699
NCBI-ProteinID:
XP_026812978
LinkDB
All DBs
Position
2:complement(8474370..8478001)
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AA seq
506 aa
AA seq
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MVVRPYNEELEYLEKKSPYKWEIKKGFQPNMKVEGVFYVNKFLEKLMLEELQNACRPGMI
GGFLPGVKQIANVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMDDPQSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNANDLEEALEMGMDWS
LREGYAWAEDKEHCEENGRMLNADSSKVSMRARKRGLPQLGTLGAGNHYAEIQVVDEVYD
KWAAKKMGIENIGQVCVMIHSGSRGFGHQVATDALLEMEKAMKRDQIEVNDRQLACARIK
SNEGQNYLKAMSAAANFAWVNRSSMTFLARQAFAKQFKLTPDDLDMHVIYDVSHNIAKME
QHYIDGKPKHLLVHRKGSTRAFPPYHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
NETFGSTCHGAGRALSRAKSRRNIDYNDVLEKLQQQGIAIRVASPKLVMEEAPESYKNVT
DVVDTCHEAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagaccgtataatgaagaactagaatatctagaaaaaaaatctccatataaa
tgggaaataaaaaaaggatttcaaccaaatatgaaggttgaaggagtgttttatgttaat
aaatttttagaaaaactaatgttggaagagttacaaaatgcatgtcgaccaggaatgatt
ggtggatttttacctggtgttaaacaaattgctaatgttgctgcattacccggcattgtt
cataaatctattggacttcccgatgtacactctggttatggatttgctatcggaaatatg
gctgcatttgatatggatgatcctcaatctattgtttcacctggtggtgtaggatttgac
attaattgtggtgtacgattacttagaacaaacttattcgaaaaagatgtccagcccatc
aaagaacaattagctcaaagtatgttcgatcacattcctgttggtgtaggatcaaaagga
atcataccaatgaatgcaaatgacttagaagaagcacttgaaatgggaatggattggtct
ctaagagaaggttatgcatgggctgaagacaaagaacattgtgaagaaaatggtagaatg
ttgaatgcagattcgtctaaagttagcatgagggctagaaaacgtggtttaccacaatta
ggaacattaggagctggtaatcattatgcagaaatacaagtggttgatgaagtttatgat
aaatgggcagcaaagaaaatgggaattgaaaatattggtcaagtatgtgttatgatacat
tctggaagtcgtggttttggacaccaagtggcaacagatgctttactggaaatggaaaag
gctatgaaacgagaccaaattgaagtcaacgatagacaattagcttgtgctcgtatcaaa
tccaatgaaggtcaaaattatttgaaagctatgtcagctgctgcaaattttgcatgggtg
aatagaagttcaatgacatttttggcccgtcaagcttttgcaaaacaattcaaattgaca
ccagatgatttagacatgcacgtcatatatgatgtatctcataatattgcaaaaatggaa
caacattatattgatggaaaacctaaacacttattggtgcatagaaagggatcgacaaga
gcgtttccaccttatcatcctcttattccggttgactaccaactaactggtcaaccagta
ttgattggtggaacaatgggtacctgttcatatgtgttgactggaactgaacagggtatg
aatgaaacattcgggtctacatgccacggtgctggacgtgcactgtcaagagctaaatct
cgtagaaatatagactataatgatgtattagaaaaattgcaacaacaagggattgccatt
cgagtagcttcaccaaaattggtaatggaagaagcacctgagtcatataaaaatgtcact
gacgtggtagacacttgccacgaggcaggaattagtaagaagactgtgaaattaagacca
attgctgttatcaaaggataa
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