Rhopalosiphum maidis (corn leaf aphid): 113553757
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Entry
113553757 CDS
T06065
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113553757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113553757
03041 Spliceosome [BR:
rmd03041
]
113553757
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113553757
Spliceosome [BR:
rmd03041
]
Complex B
Other components
Prp19-related factors
113553757
Complex C
113553757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_12
TPR_2
RPN7
NRDE-2
Mad3_BUB1_I
TPR_10
DHR-2_Lobe_A
Mad3_BUB1_I_2
MMR_HSR1_Xtn
PPR
Motif
Other DBs
NCBI-GeneID:
113553757
NCBI-ProteinID:
XP_026813060
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All DBs
Position
2:8952325..8955277
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AA seq
857 aa
AA seq
DB search
MKMELESNVNVVRENVGNDMSDAVIFQTYWLNKRDVEFEQDILRNPNSVKCWMRYIDNYK
LGPYKKVCVLYERALKQLPGSYKLWHCYLKIRRKYLKTTDNPDYEEVNNVYERALVYMNK
MPRIWIEFCTFMLKQPKLTVARRLFDRALRALPITQHVRIWPLYLKFIKESHDPEVAVKI
YRRYLKLFPEDSEDYIEYLTTSGRLDEAAVRLSEIVNNDSFVSKHGKSKHQLWNELCNLI
SKNPLEIKSLNVDAIIRSGLRRYTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTT
VRDFTQVYDAYAQFEELSLQKRMEVVHANQNSTEKDDSEIDLRMARLENLIERRLLLLNS
VLLRQNPHNVKEWLKRVQLYEGNDVQVINTFTEAVETVDPQKAVGRLHTLWVEFAKFYEK
AKQVEEARLVFKKAVLVSYIKVEHLASVWCEWVEMELRHENFNEAMRLMRQATSIPSRKV
AYHDDTETVQIRLHKSLKLWSLYLDMEESFGTVKSTMACYDRVIDLRIATPQTIINYGLF
LEENNYFEEMFKAYEKGVALFKWPNVFDIWNTYLTKFLDRYGGTKLERARDLFEECLEGC
PPQFAKCIYLLYAKLEEKHGLGRRAMAVYERATEAVLPEEKFEMFNIYIKKAAEISGIPK
TREIYMKALEVLTNNNARTMYLRFAELETKLGEIDRARAIYSHCSQICDPRVTEEFWQTW
TSFEVAHGNEDTLREMLRIKRSVQAMYNIQVNMMSAQMMSVISVEPEKSGMKLLEEKALE
NKEKPLEPIKFVLGSEQDRLPNEKVTNPDEIEFSDDENEVDGDKENEENDDEDMPTKKDV
PAELFGNLGAFTEKNTE
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggaactcgagagcaacgtcaatgtggtacgagaaaatgtaggtaatgacatg
tcagatgctgtgatcttccagacatactggctgaataagagagatgttgaatttgaacaa
gacatattgagaaatccaaattccgtcaagtgttggatgcggtatatagacaattataaa
ctggggccatacaaaaaagtttgtgtactgtatgaacgcgccttgaaacaattaccaggc
agctacaaattgtggcactgttacttgaaaatacgtcgcaagtatttaaaaacaacagac
aatccagactatgaagaagtgaacaatgtttatgagcgagcattggtatatatgaacaag
atgcctcgcatctggattgagttctgcacatttatgttgaaacaacctaaactcacagtc
gctcgtcgtctatttgacagggctcttagagccttaccaatcactcaacatgttcgaata
tggccgttatatttaaaattcataaaagaaagtcatgacccagaagttgctgttaaaata
tataggagatatttaaaattatttccagaagattcagaggattatattgaatacttgacc
acatctggacgacttgatgaagctgctgtacgcttgtctgaaattgtaaataatgacagt
tttgtatccaaacatggtaaatctaagcatcaactttggaatgaactatgcaatttaata
tcaaaaaatcctttagaaattaaatcattaaatgttgatgctattatacgtagtggttta
agacgttacactgatcagcttggtcatttgtggaattcgttagctgattattacatacgt
agcggattatttgaaagagcaagagatatatacgaagaggctattcaaactgttacaacg
gttcgtgattttacacaagtttatgatgcttatgcacaatttgaagaattaagcttacaa
aagagaatggaagttgttcatgctaatcaaaatagtactgagaaagatgatagtgaaatt
gacttacgtatggcaagattggaaaacctgattgaaagacgattattacttttaaactca
gtactgttaagacaaaacccccacaatgttaaagaatggttaaaacgtgtacagctctat
gaaggaaatgatgttcaggtaataaatacttttactgaagctgtggaaacagttgatcct
caaaaagctgttggtagattgcataccctttgggttgaatttgctaaattttatgaaaaa
gccaaacaagttgaagaagcacgtttagtatttaaaaaagctgttttagtgtcatacatt
aaagttgagcatttagccagtgtttggtgtgaatgggtagaaatggaattgagacatgag
aactttaatgaagcaatgagacttatgcgacaagcaacttcaataccttctcggaaagta
gcctatcacgatgatacagaaactgttcaaatacgattacataaatcattaaaattatgg
tctttatatttggatatggaagagagttttggaacagtcaagtcaacaatggcttgttat
gatcgagttatagatttaagaattgcaactccacaaactattattaattatggattattt
ttagaagaaaataactattttgaagaaatgtttaaagcttatgaaaaaggagtagcgcta
ttcaagtggccaaatgtttttgatatatggaatacatatttaacaaaatttttggatcgt
tatggtggtacaaaacttgaacgtgctcgtgatctttttgaggaatgtctagaaggttgc
ccaccacaatttgccaagtgtatttatttattatacgcaaagcttgaagagaaacatggt
ttaggtagacgagcaatggccgtctatgaaagagccactgaagctgttctacctgaagag
aagtttgaaatgtttaatatttacattaaaaaagcagcagaaatatctggtataccaaag
actagagaaatttatatgaaagccttggaagttttaacaaataataatgctcgtacaatg
tatctaagatttgctgaacttgaaacaaaattaggtgaaattgatcgtgctagagccata
tactcgcattgtagtcaaatttgtgaccctagagtaactgaagaattttggcagacatgg
acctcatttgaagttgctcatggtaatgaagatactctccgggaaatgttaagaattaaa
cgaagtgtacaagcaatgtacaatattcaagtgaatatgatgtcagcacaaatgatgtct
gttatttcagttgaaccagaaaagagtggaatgaagttgttagaagaaaaagcattagaa
aacaaagaaaaaccattggaacctatcaaatttgttttgggtagtgaacaagaccgttta
ccgaatgaaaaggttaccaatccagatgaaattgaattcagtgacgatgaaaatgaagtt
gatggtgacaaagaaaatgaagaaaacgatgacgaagatatgcctactaaaaaagatgtg
cctgctgaattatttggtaacttaggagcatttacagaaaaaaatactgaatag
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