Rhopalosiphum maidis (corn leaf aphid): 113554068
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Entry
113554068 CDS
T06065
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113554068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113554068
Spliceosome [BR:
rmd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
113554068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
PRP4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
eIF2A
Ge1_WD40
Beta-prop_IFT140_1st
Beta-prop_SCAP
WD40_like
Beta-prop_SPT8
WDR54
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_ACSF4
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
113554068
NCBI-ProteinID:
XP_026813549
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Position
4:complement(19517657..19520476)
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AA seq
506 aa
AA seq
DB search
MSDDEEITYVKKQKTIHYGSLEDQERIRLSLAATDNDGEPKVIGGNINVSNEYFDLEDAI
SKDKQALLEEFERKKKARHVQVSTDDDEVKKNLRKLGQAICLFGEGPAERRNRLRELLSR
VGEDVVAKKPEEEKEKRQQIKDQDTTWYHEGPPSLLDARLYMAEYSLLRSHFRLEKLREE
ASIPESTLTARLQDLHKYTTSLSIYCSQIGDTRPISYCRFSPDSQFIATSSWSGLCKLWS
VPDCTLVKTFRGHNCNVCSITFNPHAGTDENVCDLVSCASDGSVKLWSMNSKKEEPVADL
EGHAPFRVSRADFHPSGRFLGTCCFDNSWRLWDLEQGEEVLHQEGHCKPVYCMSFQSDGS
IVATGGLDAFGRVWDLRTGRCIMFMEGHLKSIYSIDFSPNGYQMATGSEDNTCRIWDVRK
RSCLYTIPAHMSLVSGLRYQPEGHFIVTSSYDNTIKIWANKTWQMLKTLSGHDNKIMGVD
ISPDSKYIASSSYDRTFKLWAPEYST
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaagaaattacttacgtaaaaaaacaaaaaacaatacactacggttca
ttggaagaccaagaacgcatccgtctatctttagctgccactgacaatgatggtgaacca
aaagttataggaggaaatataaacgtatccaatgaatattttgatttggaggatgctata
tctaaagacaaacaagcattacttgaagaatttgaacgaaaaaaaaaagctcggcatgtg
caagtgtctactgatgatgatgaagttaaaaaaaacctcaggaaacttggacaagccata
tgcttgtttggtgaaggaccagcagaaagaagaaatagattgcgagaactgctttcaaga
gtaggagaagatgttgtagcaaaaaaaccagaagaagaaaaagagaaacgacagcaaatc
aaagatcaagatacaacctggtaccatgaagggcccccttcactattagatgcacgttta
tatatggcagagtattcattattgagatcacattttcgtttggaaaaactcagagaagaa
gctagcatacctgaatcaacacttacagctcgcttacaagatttacacaaatatacaact
tctctttcaatttattgtagtcaaattggcgataccagaccaatatcatactgccgattt
agtcctgattctcagtttatagctacatcatcttggagtggtttatgtaaattatggtca
gttcctgattgtacattagtcaaaacatttagaggacataattgtaatgtctgctctatc
acatttaatccacatgctggcactgatgaaaatgtctgtgatcttgtgtcatgcgctagt
gatggttctgttaaactatggtcaatgaacagtaaaaaagaagaaccagtagcagacttg
gaaggccatgcaccatttagagtgtcgagagcagattttcatccatctggtcgattttta
ggaacttgctgctttgataattcttggcgattgtgggatttagaacaaggggaagaagtt
ctccatcaggaaggacattgtaaaccagtttattgcatgtcgtttcagagtgatggttca
attgttgcaactggaggtctggatgcttttggacgtgtttgggatttgcgtacaggaaga
tgtattatgtttatggaaggtcatttaaagtctatatatagtatagacttttcacccaat
ggttaccaaatggccactggtagtgaagataacacatgtcgtatttgggatgttagaaaa
agatcatgtctatatactattccagcgcacatgagtcttgtttcaggattgagataccaa
cctgaaggtcattttatagtcacttcttcatatgacaacacaatcaagatttgggcaaat
aaaacatggcaaatgttaaaaacgctatctggacatgacaacaaaattatgggagtggac
atatctccagattcaaaatacatagcatcatcatcatatgatagaacatttaaattatgg
gctcccgaatactcaacataa
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