Rhopalosiphum maidis (corn leaf aphid): 113554340
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Entry
113554340 CDS
T06065
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113554340
Spliceosome [BR:
rmd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113554340
Complex C
U4/U6.U5 tri-SnRNP related factors
113554340
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Gene cluster
GFIT
Motif
Pfam:
MA3
Motif
Other DBs
NCBI-GeneID:
113554340
NCBI-ProteinID:
XP_026813946
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All DBs
Position
1:16778340..16786749
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AA seq
1013 aa
AA seq
DB search
MESKVCKVINAKRTHSDDDDDNTNSKQTRRNSSRDRQSTKDKYDKGGRRNYEELKVGDPY
YSGGTASDYRKGEDRYKDESRHRRRHRSRDRQEKENRSKNTDSKKEEKIGAPYYSGGIAS
IDERESGEETSDDEDDKIGQRYYSTENADSQRKNSENYWNKYAKKDKRQNDDVSDVPLHQ
KKTVELLTSKTGGAYIPPAKLRMMQESITDKSSAAYQRIAWEALKKSIHGLTNKINVDNI
GKVTRDLLRENIVRGRGLLCRSIMQAQLASTTYTHVFAALVAIINTKFPNIGELLLTRCI
VQFKRAYRRNEKSQCLGSVTFIAHLINQSVAHEILALELLTLFVETPTEDSIEVAVAFLK
ECGQKMSQVSKKGMNAIFDMLRNILHDGQLDKRVQYMIEVMFQIRKDGFKDHPAVIEQLD
LVPEEDQFTHLLTLDSAKEPQDILNVYKFDPDFEANEERYKSLRAEILGSDNEEESGSEN
DGDDDEDDDDDDDDEDDGEEKEGEGKVIIDNTETNMISLRKTIYLTIHSSLDYEECAHKL
MKMQLKPGQEIEMCHMFLDCCGEQRTYEKFFGLLAQRFCQINNMFIEPLEKIFIDSYATV
HRLETNKLRNVARFFAHLLFTDSISWVVLSTIHLNEEETTSSSRIYIKILFQELAEHMGL
NKLNARVQNPELKLAFEGIFPKDNPKNTRFSINFFTSIGLGGLTDELRDFLKVQPKQVPA
VATIIDQLSESSDSDSDSSSSSSSSSSSSSSGSSSSSSSSSGSSSSSSSSSSNSSSNKKN
KKRKDHDKSKKNAEKKENEKPKKNEKKNKIDKPRKYEEKKDNDIPRQKENRNENDNWKRN
EDKKDNDKSRKYEDRNEKSKRCEERKESNDKPKRYEERRDNDMSRRNEERKDNDRSRKYE
DRNEDDTSKRNDERKDNDRSRKYEDRNENDTSKRNDERKENYKPRRNEERKENDRPRRNE
EKKENDRYSRNEIDKAKRNENEKSRRNDDRRENDRSTRKNEEGKENDRLARKR
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtaaagtgtgtaaagttattaatgctaagaggacccacagcgatgacgatgac
gataatacaaattcaaaacaaacaagaagaaactctagtcgagatcgtcaatcgacaaaa
gataaatatgacaagggtggtagacgtaattacgaagagttaaaagttggtgatccatac
tattcgggtggtactgcatcggattaccgtaaaggcgaggatcggtataaggatgaatct
agacatagaagacgccataggagtagagatcgtcaagaaaaagaaaacagatctaaaaat
acagacagtaaaaaagaggaaaaaattggtgctccatattattctggcggaatagcaagt
attgatgaacgtgagagtggtgaagaaacgagtgacgatgaagatgataaaattggacaa
cggtactattctacagaaaacgccgattctcaaagaaagaatagtgaaaactattggaac
aaatacgctaaaaaagataaaagacaaaacgatgacgtaagcgatgtaccattacatcag
aaaaaaactgtggaactattaacatctaaaactggaggtgcctatatcccgcctgcaaaa
ttgagaatgatgcaagaaagtatcacagataagtcaagtgctgcatatcagagaattgcc
tgggaggcattgaaaaagtcaatacatggtctgaccaacaaaattaatgtagataatatt
ggaaaagttactagagatttgttacgagaaaacattgttcgtggtcgaggtttattatgc
cggtccattatgcaagctcaattagcctcaacaacatatactcatgtgtttgctgctcta
gtggccattataaacacaaaatttccaaacattggagaattattgttgacaaggtgcatt
gtacagtttaaaagagcatatcgcagaaacgaaaaatctcaatgtttaggatcagtaaca
tttattgctcatttaatcaatcaaagtgttgcacatgaaatattagctttagaattatta
actttatttgtggagacacctacggaagattctatagaggtagctgtggcatttttgaaa
gaatgtggacagaaaatgagtcaagtcagcaaaaaaggaatgaacgccatttttgatatg
ttacgcaatatattacatgatggacaacttgacaaaagggtacaatacatgatagaagta
atgtttcaaatacgcaaagatggatttaaagatcacccagctgtaattgaacaactcgat
ttagtacctgaagaggatcaatttacacatttactaactttagactctgctaaagagccc
caagatattctgaatgtttataaatttgatccggactttgaagctaatgaagaacgttat
aaatcattgagagctgaaatattagggtcagacaatgaagaggaaagtgggtcagaaaat
gatggtgatgatgatgaggatgatgatgatgatgatgatgatgaagatgatggtgaagaa
aaagaaggagaaggtaaagttattattgataatacagaaacaaacatgatatcattacgt
aaaacaatttacctaacaatacattcatcattggattatgaggaatgtgctcacaaattg
atgaaaatgcaattgaaaccgggtcaagaaatagaaatgtgtcatatgtttttggattgt
tgcggtgaacaaagaacctacgaaaaattttttggccttttagcacaaagattttgtcaa
ataaataatatgtttattgagccattagaaaaaatttttatcgatagttatgcaactgtt
caccgtttggagacaaacaaattacgcaatgtagccagattctttgcacatttattgttt
acagactctatatcatgggttgtcttatccacaatacatctaaacgaagaggagacaact
tcttctagtaggatttatattaaaattctgttccaagaactagctgaacacatgggactt
aataaattgaatgctcgagttcagaatccggaattaaaactagcttttgaaggaattttc
cctaaagataacccaaaaaatactaggttttctatcaattttttcacctctattggttta
ggaggcttaactgacgaattgagagactttttaaaagtacaacccaaacaagttcccgct
gttgctacaattattgaccagctttcagaatcatcagatagtgacagtgacagtagttct
agtagtagcagcagtagtagtagcagcagtagtggtagcagcagtagtagtagcagcagt
agtggttccagcagtagcagcagcagcagcagtagcaatagttcaagcaacaaaaaaaat
aaaaaaagaaaagatcatgataaatctaaaaaaaatgcagaaaagaaggaaaatgaaaaa
cctaaaaaaaacgagaaaaaaaataaaattgataaacctagaaaatatgaagaaaaaaag
gataatgatatacctagacaaaaagaaaacagaaatgaaaatgataattggaaaagaaat
gaagataaaaaagataatgataaatctagaaaatatgaagatagaaacgaaaaatctaaa
agatgcgaggaaagaaaggaaagtaatgataaacctaaaagatatgaagaaagaagagat
aatgacatgtcaagacgaaacgaagaaagaaaggataatgaccgatctagaaaatatgaa
gatagaaatgaagatgatacatccaagagaaatgacgaaagaaaggataatgaccgatct
agaaaatatgaagatagaaatgaaaatgatacatccaagagaaatgatgaaagaaaggaa
aattataaacctagaagaaatgaagaaagaaaagaaaatgatagaccgaggagaaatgaa
gaaaaaaaagaaaatgatagatatagtagaaatgaaattgacaaagctaaaagaaatgaa
aatgaaaaatctcgaagaaatgatgacagaagagaaaatgatagatctacaagaaaaaat
gaagaagggaaagaaaatgatagacttgcaagaaaacggtaa
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