Rhopalosiphum maidis (corn leaf aphid): 113554411
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Entry
113554411 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113554411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rmd04131
]
113554411
Membrane trafficking [BR:
rmd04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
113554411
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
Beta-prop_EML_2
WD40_CDC20-Fz
VPS18_RING_C
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
zf_RING_Vps8_fungal
zf-RING_11
ANAPC4_WD40
zf-RING_Vps41
PorZ_N_b_propeller
zf_RING_Vps8
Beta-prop_WDR3_1st
zf-RING_5
Beta-prop_WDR5
Clathrin
Motif
Other DBs
NCBI-GeneID:
113554411
NCBI-ProteinID:
XP_026814040
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All DBs
Position
2:complement(63331003..63339922)
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AA seq
1202 aa
AA seq
DB search
MEANRLDQDKQSLMNILESLNLSSSEIDDTEFNIPKVNDIPTVESILNDEDISLLSEDDV
TVYQSKLKVPWYDSGTDSTSLGSSSSCHINTEQLPKCLNLKSDPGRILRHTILKPVSNQM
HSFCDRFDAGQPSAIKFSLLIAIGTSKGFIILFDSLQTFQWYHEAVNCGAVSAIDFNHDC
SRLIVGYINGTIIMFDSSSTTCKILRVMNDAHTPDTAVLHLKFSDLPNLAIVNNSAGSVF
ELNFKRNFGIRSVESKCLFSGGRGRVCCIEPLLFNQLSNHPMNGYVIIAMATLSKVIIVT
IRPNTELLLSNNIISSRPCLPLLSWQFVIIQFNKTLNSSHRIMDPVLAFTRDDTVYFYQV
NINDQDRLCCCILQKIKLSYTIIACSWMNARTLLTMDSSDKVYLVDVRVGDEMEQSDLLN
ISLVYTSSYYNGIDSQHLDKCCYSSVHGHNSQLILLGKKNVHIISIRSWIERLDSLTDKK
LFSDALQLGVDFLEERGKAVLGLRGTRAHRHKIVKDKVINIVALYIDSMVDTNNPINYKE
GIPIVFDISVHLQKTNLLFNRLWDGVELIESSCKVYLECLKNYLIEGQFDEVPTIIVQKL
FTYLSHSNQLKEIEKCMLNVKVECLDIEQSLNLSRAHALYDGLISIWTRALEDYLAPLQE
LIPKIIPLPNGEYTDDTIELGNKILIYLSGCLLGIAYPNRGYIPQHLQDTVRNNIVQFXC
SQHSIKAKDDEDIYPYLRILLKFNTTEFLNVFSMAFSDCRFMSQQKQRICCILTSLTMNS
KDLKSNQLGLVYAFIVRWQQDDCNFMKLDKQVFETVTSKLISTEQTTPIEDREKAFIQLI
RSGAFDNNPDLLKIAEEAKFYTVCREICSERGEFSQMFKYYILDDSNKYQIFSFISSKPE
YFEQLSYDNSKVLLEIDTIQCGVIFGTFYPHLVYDVSNQTKTSYQRYLFFKGAIPYINSD
MKLCTCYLELLCQHEPNAVMDFVKTNDSLHLTKAMAATKRAGLDNVTAIFLERLGDFQGA
FDLLFSKLQEAILKENAVEECTEVLVALAQRGSAVLDPKITWLPILQCLLNLRSHDHLQK
VLDNSDLNLATEMHLLLNSSTIAQGTIGHFRNLIMGLIDKCQYEQDILKSFEMLLHDDLH
SKVADAITIAKKGVSNPIICSSCNQKIIMEPMFVFRCGHGFHSDCLGLNTTCTYCIFTNV
KL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaacagattagatcaagacaaacaatctttaatgaatatattagagtcacta
aatctgagttcatctgaaattgatgacaccgaattcaatattcctaaagtcaatgatatt
cctactgtagaaagtatattaaatgatgaagatatttctttattaagtgaagatgatgtt
acagtctaccaaagcaaattaaaagtaccatggtatgattcaggaactgattctacttca
ttgggtagctcaagtagttgtcatataaacacagaacaactaccaaaatgcttaaattta
aaatcagatcctggacgaattttacgtcatacaattctgaagcctgtttccaatcaaatg
cattcattttgcgatcgttttgatgctggacaacctagtgctattaagttttcgcttctt
attgccattggtacaagcaaaggttttataatcttatttgattctttacaaacattccaa
tggtatcatgaagctgtaaactgtggtgcagtatccgccattgattttaatcatgattgt
tctcgactaattgttggatacataaatggaacaataataatgtttgattcttcttctact
acttgtaaaatactaagagtcatgaatgatgcacatactccagatactgcggtattgcat
ctaaaattctcagatttgccgaatttagctattgtgaataatagtgctggttctgtgttt
gaattaaattttaaaagaaattttggtatacgtagtgttgaatcaaaatgtttattttct
ggtggtcgtggaagagtatgttgtattgaaccattattattcaatcaactatccaatcat
cctatgaatggctatgtaataatagcaatggctactctatctaaagtaatcattgttaca
attcggccaaacactgaactactgttatcaaacaatataatttcatcacgtccatgttta
ccattactatcttggcagtttgtcattatacaatttaataaaacattaaattcaagtcat
agaattatggacccagtattagcttttacacgagatgatacagtctacttttatcaagtt
aatatcaatgaccaagatcgtctatgttgttgtattttacaaaaaattaaattatcatac
acaataattgcatgcagctggatgaatgcacgtactctattgactatggactcatcagat
aaagtttatcttgttgatgttcgtgtaggagatgaaatggaacagtcagatcttttaaat
atttccttagtttacacttctagctactataatggcatagatagtcagcatttagataaa
tgttgctatagttcagttcatggtcataatagtcaattaatattgttaggaaagaagaat
gttcatattattagtataagaagctggattgaacgtctggatagtttaacagataaaaaa
ctatttagtgatgcattgcaattaggtgtggattttttggaagaaagaggaaaagctgtt
cttggtcttagaggtacaagagcccatagacataaaatagttaaagacaaggtcataaac
attgttgctttatatattgattctatggtggatacaaataacccaataaattataaggaa
ggtattcctattgtatttgatataagtgtacatctacaaaaaacaaatctattgtttaat
cgcttatgggatggagtagagttaattgaatcttcttgcaaagtttacttggaatgttta
aagaactatttaattgaaggtcaatttgatgaagtaccaacaattatagttcaaaagtta
ttcacatatctttcacactctaatcaattaaaagaaattgaaaaatgtatgcttaatgta
aaagttgaatgcttagacattgagcaatctttaaacctatcaagagctcatgcattgtat
gatggtctcataagtatctggacaagggcattagaagattatttagcacccttacaagaa
cttattcctaaaattattccattgccaaatggagagtatacagatgatacaatagaactt
ggaaacaaaattttgatttatttaagtgggtgtttattaggtattgcatatcctaatcga
ggctatatacctcaacatttacaagatacagttaggaataatattgtacaattcntatgc
tctcaacacagtattaaagcaaaagacgatgaagatatatatccatatctcagaattttg
cttaaatttaatacaacagagttcctaaatgtcttttcaatggcattttccgattgtcgt
tttatgagtcaacaaaaacaacgtatttgttgtattttaacatcacttacaatgaacagt
aaagatttaaaatccaatcaactaggtttagtttatgcgtttatagtacgttggcaacaa
gatgattgtaattttatgaaacttgataaacaagtttttgaaactgttacatcaaagttg
atatcaacagaacaaacaacaccaattgaagatagagaaaaagcatttattcaattaata
cgctctggtgcatttgacaataatcctgatttattgaaaattgcagaagaggcaaaattt
tatactgtctgcagagaaatttgttcagaacgtggagaatttagtcaaatgttcaaatat
tatatacttgatgactcaaacaaatatcaaatattttcatttattagttctaaaccagaa
tattttgaacaactttcttatgataactcaaaggttttactggaaattgacacaattcaa
tgtggagtaatatttggaacattttatccacatcttgtttatgatgtttctaatcaaaca
aaaacaagctatcaaagatatcttttttttaaaggtgcaataccgtacataaattctgat
atgaaactatgcacttgttatttggaactcttatgtcaacatgaaccaaatgctgtaatg
gattttgtaaaaacaaatgattcattacatttaacaaaagcaatggctgcaacaaaaaga
gcaggattagacaatgttacagctatatttctggaaagattaggagatttccaaggagca
tttgatttactgtttagtaaactacaagaagccattttaaaggaaaatgctgttgaagaa
tgcactgaagttttagtggcattagctcaaagaggatctgctgtgctggatcccaaaata
acatggctaccaattttacaatgtctcttgaatcttcgatcacatgatcatttacaaaaa
gttttggacaatagtgatcttaatttagccactgaaatgcatttgcttttgaatagttca
acaatagctcagggtactattggacatttcagaaatcttataatgggtttaattgataaa
tgtcagtatgaacaagatatattaaagtcctttgaaatgttacttcatgatgatttacac
agtaaagtagctgacgcaataactatagctaaaaaaggtgttagtaatcctataatatgt
tcatcgtgtaatcaaaaaattattatggaaccaatgtttgttttcagatgtggtcatgga
tttcattcagattgtttaggtttgaacacaacttgcacatactgcatctttactaatgtc
aaattgtag
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