Rhopalosiphum maidis (corn leaf aphid): 113554828
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Entry
113554828 CDS
T06065
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03020
RNA polymerase
rmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113554828
09124 Replication and repair
03420 Nucleotide excision repair
113554828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113554828
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113554828
Enzymes [BR:
rmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113554828
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113554828
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113554828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
113554828
NCBI-ProteinID:
XP_026814682
LinkDB
All DBs
Position
2:56162250..56166091
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AA seq
1177 aa
AA seq
DB search
MYDLGDDEYEEEEETEEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDSPQIELQAESQHTHGEIDTPTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLT
YSAPLYVDITKTVIKDGEEPVVTQHSKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKAEIRSCLEHSSRPTSTLWVNM
MARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYA
QKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL
SHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEIAPSAIVDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS
EVSIIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDSLKERDYNNYGWQVLVSN
GVVEYIDTLEEETTMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINS
IVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDSESKRIGDQEEVFEKPNRQSCQ
GMRNAIYDKLDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSKRDCSTFLRN
SETGLIDQVLLTLNSEGYKFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISTLLQEY
GYHLRGNEVMYNGFSGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGR
ARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECK
GCKNKTQISQVKLPYAAKLLFQELMSMNIAPRLMVTN
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacttgggcgacgatgaatatgaagaagaagaagagaccgaagaaatttcaagt
gaactttggcaagaagcttgctggatagtaatcaattcttatttcgatgaaaagggtctt
gttagacaacaattggactcgtttgatgaatttattcaaatgtccgtgcagcgtattgta
gaagactctcctcaaattgagttacaagctgaatcgcaacatacacatggcgaaattgat
actcctactaagtatcaaattaagtttgaacagatttacttatctaaacctactcattgg
gaaaaagatggttcgccatctcctatgatgcctaatgaagctagattacgtaatttaaca
tattctgctccactttatgtagatattacaaaaactgtgattaaagatggtgaagaacca
gttgtcactcaacattctaaatcattcataggtaaaatacctataatgttaaggtcaaca
tattgtctactatttggattaaacgatcgtgatttgactgagttaaatgaatgtccatta
gatcctggaggttatttcattattaacgggtccgaaaaagtattaattgctcaggaaaaa
atggctacaaatactgtgtatgtttttagtatgaaagatggaaaatatgcatttaaggct
gaaataagatcttgtttagaacattcatctcgtccaacttctactctttgggttaatatg
atggctcgtggtggtcaaagtataaagaaatctgctattggtcaaagaataattgcaata
ttgccatatattaaacaagaaatacctattatgattgtgtttagagctttaggatttgta
gccgatcgtgatatattagaacacataatttatgattttgatgatccagaaatgatggaa
atggtgaaaccatctttagatgaagcttttgttatacaagaacaaaatgttgcgttaaat
tttattggttcccgtggagcaagacccggagtaactaaagataaacgtattaagtatgct
agagaaatccttcaaaaagaaatgttacctcacgtgggtgtgtcagatttttgtgaaaca
aaaaaggcatatttcttgggatatatggttcatcgtcttctcttagcttcacttggtaga
cgtgaattagatgacagagatcattatggtaacaaacgtttggatttggctggaccttta
ttggcatttttatttagaggattgttcaaaaatttaatgaaagaagtgcgtatgtatgct
caaaaattcattgatcgtggaaaagattttaatttagatctagcaattaaaacaaaactt
attactgatggtcttaggtattcattagctacaggaaattggggcgatcaaaagaaagcc
catcaagcaagggctggtgtatcacaagtattaaacagacttacatttgcctcaacatta
tcacatttaagacgtgtgaattctcctattgggcgagatggaaaattagcaaaacctagg
cagttgcacaatactctatggggtatgttatgcccagcagaaaccccagaaggagctgct
gttggtttggtaaaaaatcttgccttgatggcttatatatctgttggctctcagccatca
ccaattttggaatttttagaagaatggagtatggaaaacttggaagaaattgctccttcg
gcaattgtagatgccactaaaatatttgtaaatggatgttgggttggtattcatcgtgat
cctgaacaacttatgggtactttgagaaaacttcgacgacaaatggacatcattgtaagt
gaagttagtattattcgtgatatacgtgatcgtgaaattagaatttatacagatgctggt
cgtatttgtcgaccattgcttattgttgaaaatggaaaattattgctaaaaaaacgtcat
attgacagcttaaaagagcgtgattataacaattatggatggcaagtgcttgtatccaat
ggtgtagttgaatatattgatactttggaagaagaaactacaatgattgctatgtcacct
gatgatttaagacaagaaaaagaatatgcatactgtacaacttacacacattgtgaaatt
catccagctatgatattaggagtatgtgcatccatcattccattccctgatcacaatcaa
agccctaggaatacatatcaaagtgctatgggtaaacaagccatgggtgtctacataacc
aattatcatgttcgaatggatactttagctcatgttctttattatccacataaacctctt
gtaacgacaagatctatggagtatttacgtttcagagaactgccagctggtattaattct
attgtagcaattttatgttatactggttataatcaagaagatagtgtaatattaaatgct
tctgcagtagaaagaggattcttccggtctgtatttttccgttcttataaagattctgaa
tcaaaacgaattggagatcaggaagaggtctttgaaaaaccaaatcgccaatcatgtcaa
ggtatgagaaatgccatttatgataagttagatgatgatggtataatatctcccggtctc
agagtgtctggcgatgatgttattattggaaaaacaatgactcttccagataatgaagat
gaacttgaaggaactacaaaaaaatattccaaacgagattgtagtacatttttaagaaat
agtgaaactggtctcattgatcaagttttattaacattaaattcggaaggttacaaattt
tgtaagattcgagttcgctctgaaagaatacctcaaattggtgataaatttgcttcaagg
cacggtcaaaaaggaacatgtggaatacaatacagacaagaagatatgcctttcacttgt
gaaggcatcacacctgatattattattaatcctcacgctatcccttcccgtatgacaatt
ggacatttaattgagtgcttacaaggaaaagtgtctgcaaataaaggagaaattggtgat
gctacgccatttaatgatgctgtaaatgtacaaaaaatttcaactttattacaagaatat
ggttatcatctacgaggaaatgaagttatgtataatggcttttctggaagaaaaattaac
gctcaaatattcttagggccgacttattatcaacgtcttaaacacatggtggatgataag
atacattcaagagcaagaggaccagttcaaattttagtacggcaacctatggaaggaaga
gcaagggatggtggattacgttttggggagatggaacgagattgtcaaatagcacacggt
gctgcacaatttttacgtgaacgtttatttgaagtatctgacccttaccgtattcatata
tgtaatttctgtggcttaattgcaattgcaaatctaagaaataatacttttgaatgtaag
ggatgtaaaaataaaactcagatttcacaagtaaaattaccatatgcagcaaagttgtta
ttccaagaattaatgtcaatgaacatcgctccaaggttgatggtcactaactaa
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integrated database retrieval system
