KEGG   Rhopalosiphum maidis (corn leaf aphid): 113554931
Entry
113554931         CDS       T06065                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
rmd  Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03013  Nucleocytoplasmic transport
rmd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rmd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113554931
  09122 Translation
   03013 Nucleocytoplasmic transport
    113554931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rmd03019]
    113554931
   03041 Spliceosome [BR:rmd03041]
    113554931
Messenger RNA biogenesis [BR:rmd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     113554931
Spliceosome [BR:rmd03041]
 Complex C
  Other components
   EJC/TREX
    113554931
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    113554931
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st RMC1_N Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_EML Tricorn_2nd eIF2A WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st WD40_RFWD3 Peptidase_S9_N Cytochrom_D1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_SCAP PD40 Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_DCAF12 DPPIV_N Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 113554931
NCBI-ProteinID: XP_026814832
LinkDB
Position
2:complement(36159165..36164383)
AA seq 325 aa
MSYWKNFDVNVNELKDYFKTHKSVKEFQAHSSKVHSVGWSCDGKRLASCSFDKSVATFTL
DKDRLNKEYTYKGHSGSVDQLCWHKFNPDLLSTASGDKTVKVWDVRHQKCSNTILTKGEN
INITWSPDGHTIAVGNKEDLITFIDMRTLKPISEQQFNFEVNEMSWNNESDLFFLTNGLG
CVYVLSFPDLVQRHVVKAHPGTCICIEFAPSGHYFAVGSADASVSLWDLENLACVQTYTR
LDWPVRALSFSYDGKMLASGSEDLYVDIADVTTGEKITDIPIEAATFTVAWHPKQYLLAF
ACDDKEQFDRKKDTGNLKVFGFSSE
NT seq 978 nt   +upstreamnt  +downstreamnt
atgagttattggaaaaattttgacgttaatgtgaatgaattaaaagattacttcaaaaca
cataagtctgtcaaagaatttcaagcgcattcgtcaaaagtacattcagttggttggagt
tgtgacggcaaacgtttagcctcttgttcatttgataaatctgtggctacattcacattg
gataaagaccgtttgaacaaggaatacacatataaaggacacagtggtagtgtggatcag
ttatgttggcataagtttaacccagatttactgagtacagctagtggtgacaaaacagtc
aaagtatgggatgtgagacaccagaaatgttcaaatactattttgaccaaaggagagaat
attaacatcacatggtctcctgatggacacacaattgctgttggaaacaaagaagatttg
ataactttcattgatatgcgcacccttaaaccaatcagtgagcaacagttcaattttgaa
gtgaacgaaatgtcatggaacaatgaaagtgatttgtttttcttaacgaacggtttagga
tgtgtctatgtgctaagttttccagacttagttcaacggcatgtggtaaaagctcatcca
ggtacatgtatttgtatagaatttgcgccaagtggccattattttgctgtaggttcggca
gatgcttctgtgtcattatgggaccttgagaatttggcttgtgtacagacttacactaga
ttggattggccagttcgagctttaagtttttcgtatgatggtaaaatgttagcatcaggt
agtgaagatttgtatgtggacattgcagatgttactacaggagaaaagataactgatata
ccaattgaagcagcaacattcactgtggcatggcatccaaaacagtatttattggcattt
gcatgtgatgataaagaacaatttgataggaaaaaagatactggaaatcttaaagtattt
ggatttagttctgaataa

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