Rhopalosiphum maidis (corn leaf aphid): 113555062
Help
Entry
113555062 CDS
T06065
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113555062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113555062
03041 Spliceosome [BR:
rmd03041
]
113555062
03036 Chromosome and associated proteins [BR:
rmd03036
]
113555062
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113555062
Spliceosome [BR:
rmd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113555062
Complex B
113555062
Complex C
U2 SnRNP specific factors
113555062
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
113555062
TFTC complex
113555062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
113555062
NCBI-ProteinID:
XP_026815169
LinkDB
All DBs
Position
2:28581446..28595932
Genome browser
AA seq
1218 aa
AA seq
DB search
MYLYNMTLQRGSGITHAIHGNFSGGKVQEILVSRGKSLELMRPDTNTGKVHTLLTVEVFG
IIRALMSFRQSGGTKDYIVVGSDSGRIVILEYLPSKNVLDKVHQETFGKSGCRRIVPGQY
LAIDPKGRAIMIGAVEKQKLVYIPNRDAEARLTISSPLEANKSNTLVYHMVGIDVAFDNP
IFACLEIDYEEVDADPTGEAVQTTRQTLTFYEVDFGLNHVVRKYSEPLEEHANSLITVPG
DKDGPGGVLICSENYITYKNQGEQPDIRCPIPRRRNDLDDPERGMILVCSATHKTKSMFF
FLVQTEQGDVFKVTLETNEEFVTEIRMKYFDTVPVASAMCVLKTGFLFVASEFGNHYLYQ
IANLGDDDDEPEFSSAMPLEEGDTFFFAPRQLRNLVLVDEMDSLSPIMACQVADLAAEDT
PQLYMACGRGSRSTLRVLRHGLEVSEMAVSELPGSPNAVWTVKRRADENFDAYIIVSFSN
ATLVLSIGETVEEVSDSGFLGTTPTLSCSPLGDDAVVQIYPNGVRHIRSDKRMHDWKAPE
KKKIVKCAANQRQVVIALGGGELVYFEMDPTGHLNEHKDRKEMNSDVLCMALANAPSGEQ
MSRFLAVGLTDETVRIISLDTTDCLVQLKMQAIPAMPESLCIVEMGASDGGSSDEPGMNS
LSMLYLNIGLQNGVLLRTVLDGVTGEMADTRARYLGGKPVKLFKIRTRGNEAVLAMSSRS
WLSYYYQNRFHLTPLSYESLEYASGFSSEQCPEGIVAISGNTLRILALEKLGAVFNQVSF
PVEYTPRKFVIHPDSAHLIVVETEHNAYTEQTKKQRRIQMAEEMQEAAGEEEQELAKEMA
EAFLNEDLPENIFGAPKAGPGMWASLVRLFNPVQGITEAVYRFPQNEAVMSVALVRFSSY
PDSQFVLFGVANELHLNPRHVTCGYIYTYKVNPTCTSLELVHKTTVDNVPTAICGFQGRV
IIGIGRILRLYDIGKKKLLRKCENKQIPLLIVGIRVMGCRIYVSDVQESVYMVRYKRNEN
QLIIFADDTQPRYITAMEILDYNTVATADKCGNISVVRLASSISDEVDDDPTGNKSLWDR
GLLNGASQKADFIVNFHIGEICTSIQKATLIPGGSESLVYATVTGTIGVLVPFTAHEEQD
FFQHLEMHMRSENPPLCGRDHLSYRSYYFPVKNVCDGDLCEQYNSIDIAKQKSIAADLDK
TPAEVSKRLEDIRTRYAF
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtataatatgacattgcaacgtggtagcggcattacgcatgctatccatggc
aatttcagtggtggaaaagtacaagaaattttagtatctcgtggaaaatctttagagctc
atgagacctgatacaaatactggcaaagtccacacattgctaactgttgaggtatttgga
attattcgagctttgatgagttttaggcaatctggcggtactaaagattacatagttgtt
ggttctgattctggaagaattgttatattggaatatctgccttcaaaaaatgtcttagat
aaagtgcatcaagaaacttttggaaagagtgggtgcaggcgaattgttcctggacaatat
ttggctattgacccaaaaggaagagctataatgattggcgcggtagaaaagcaaaaatta
gtttacattcctaacagagatgctgaagcacggcttacaatttcatctcctttggaagct
aataaaagcaatacacttgtgtaccatatggttggaattgatgtagcttttgacaatcca
atttttgcttgccttgaaattgactatgaggaagttgatgcagatccaactggagaagct
gttcaaactacaagacagactcttacattttatgaagttgattttggtttgaatcatgta
gttcgtaaatatagtgaacctttagaagaacatgctaattctcttattactgttcctggt
gataaagatggacctggtggtgtactgatttgttcagaaaattatattacttataaaaat
caaggagaacaaccagacatacgatgtccgattccacgtagacgtaacgatttggatgat
cccgaaagaggaatgattttagtatgtagtgctacacataagactaaatctatgtttttc
ttcttggttcagacagaacaaggggatgttttcaaagtgacattagaaaccaatgaagag
tttgttacagaaattagaatgaaatattttgatactgttccagtagcttctgccatgtgt
gttctaaaaactgggtttttatttgtagcatcagagtttggtaaccattacttatatcag
attgccaatttgggtgatgatgatgatgaaccagagtttagctcagcaatgcctcttgag
gaaggagatacatttttttttgctccaagacaattgagaaatttagtattagttgatgaa
atggattcattgtcacctataatggcttgtcaagttgctgatttagctgccgaagatacc
ccacaattatatatggcttgtggtcgaggttcaagatctaccttaagagttttaaggcac
ggtcttgaagtttctgaaatggcagtttctgaactacccggaagtccaaatgcagtatgg
acagtgaaaagaagagcagatgaaaattttgatgcctatatcattgtgtctttctcaaat
gccactctagtattgtctattggagaaactgtggaagaagtttccgattcaggtttctta
ggaactacgccaacactatcttgttctccattaggtgatgatgctgttgtacaaatttat
cctaatggtgtgcgccacattcgttctgataaaagaatgcatgactggaaagctcctgaa
aagaagaagattgttaagtgtgctgctaatcaacgacaagttgtaattgcccttggtggt
ggtgaacttgtatattttgaaatggatccgactggacatttaaatgaacataaggatcgt
aaagaaatgaattctgatgttctttgtatggcattagcaaatgctccttctggggaacag
atgtcacgctttttagctgttgggttgactgatgaaacagtccgtatcatttctttagat
actactgattgtttagtacaattaaaaatgcaagcgataccagctatgccagaatcatta
tgtattgtagaaatgggtgctagtgacggtggttcttcggatgaaccaggaatgaattca
ctatcaatgctgtatttgaatattggtttacaaaatggtgtattactacgtacagttctg
gatggtgttactggagaaatggctgatacacgtgcacgttatttaggaggcaaacctgta
aaactttttaaaatcagaacccggggaaatgaagctgtacttgccatgtcaagtagatca
tggcttagttattactaccaaaatcgttttcacctaactccgttgtcatatgaaagttta
gaatatgcatctggtttctcttctgaacagtgtcctgaaggtatagttgctatttctggt
aataccttgcgcattttggcccttgaaaaattgggagctgtattcaaccaagtttcattt
cctgttgaatatacacccagaaaatttgttatccaccctgattctgctcatttaattgtg
gtggaaactgaacacaatgcatacaccgagcaaaccaaaaaacagaggcgaatacaaatg
gcagaagaaatgcaagaagccgctggagaggaagaacaagaattagctaaggaaatggct
gaagcttttttgaatgaagatttaccagaaaatatttttggtgctcccaaagctggtcct
ggaatgtgggcatcattagtcagattgtttaatccagttcaaggtataacagaagctgtt
tataggttccctcaaaatgaagctgttatgagtgttgctcttgtacgtttttcgagttat
ccagattcacagtttgttctttttggtgttgcaaatgaacttcatctgaacccaagacat
gttacttgtggatatatctacacttataaagttaaccctacatgcacttctttggaatta
gttcataagactacagttgataatgtaccaactgcaatatgtggattccagggacgtgtt
ataattggtattggtcgaattttacgactttatgacattggtaaaaaaaaactgttacgg
aaatgtgaaaataaacaaattccattattaatagttggaatccgtgttatgggctgtaga
atatatgtgagtgacgtgcaagaaagtgtgtatatggtacgatataagcgtaatgaaaat
cagttaattatttttgctgatgatacacaacctagatatattactgcaatggaaatactt
gattataatacagttgctacagctgacaaatgtggaaatatttcagtggttcggttagca
tcatcaatatcagatgaagttgatgatgatccaacaggtaataaaagcctgtgggatcgt
ggtttacttaatggagcttctcaaaaagctgattttattgtgaatttccatattggagaa
atttgtacttcaatacaaaaagctacattaatacctggtggttctgaatctcttgtttat
gctactgtgactggtactattggtgttctcgtgccatttactgcacatgaagaacaagac
tttttccagcatcttgaaatgcatatgagatctgagaacccaccactttgcggaagagat
catttatcatatcgatcttattatttccctgtaaaaaatgtctgtgatggcgatttatgt
gaacaatataattctatcgatattgccaaacagaaaagcattgcagcagatctcgacaag
actcctgccgaagtgtctaaaagacttgaagacattaggacaagatatgcattttaa
DBGET
integrated database retrieval system
