Rhopalosiphum maidis (corn leaf aphid): 113555083
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Entry
113555083 CDS
T06065
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113555083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113555083
03012 Translation factors [BR:
rmd03012
]
113555083
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113555083
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
113555083
Translation factors [BR:
rmd03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113555083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_19
AAA_22
ResIII
nSTAND3
ATPase
T2SSE
NPHP3_N
AAA_7
AAA_14
AAA_23
AAA_24
NACHT
AAA_16
Motif
Other DBs
NCBI-GeneID:
113555083
NCBI-ProteinID:
XP_026815211
LinkDB
All DBs
Position
4:9740053..9746720
Genome browser
AA seq
1057 aa
AA seq
DB search
MPPMKPFRVNKQTGPKDKNKGPRQQSKSSSSKNNRDDDDFFLDNGGPSNINDKQKSRLSH
PPHLKGREIGLWHARRQASLKEDEEMLDMARPKVKPPSHLRGRELDMWHKEQNRLWQKSK
KKEQQKELGKCFIKLRIDGIARMEMDLLKLEEELPIPDENIKPIPCIISGSKLNTKDYSN
HNYRALNLLTLKDEDVDENAEYIIDRYKKLEDSNFKRKFLDNITGSMEENLVASIQSNMK
LQNDESKNAFLRNELENKRKSAKYRSMCEIRKKLPSYSKKDEILELVHRNQVILISGETG
CGKTTQMAQFILDDAIMSGRGSTCRIVCTQPRRISAISVAERVADERAERIGEASVGYQI
RLERKLGREYGSILFCTTGILLQHIQRDSALNYYSHIIIDEIHERDTISDFTLTILKSII
PVRPDIKVILMSATLNAAAFSKYYNDCPSLNIPGFTYPVEELYLEDIYTLNRFRYFPKKP
TQRSRKIKPGDPFSEFVIPYVNEMRRFKKFPSAVLNWLENPISEDTDYELILELIYYICN
NKDDGAILVFLSGWDQISKMTKILKDKGFGNTSRYILIPLHSMLPTVSQKSVFESPPRGV
RKIILSTNIAETSVTIDDVVYVIDNGRMKLKGFDAENNIGTLNEEWVSLANSRQRRGRAG
RVRPGICYHLYSKGRERSFNDYVLPEMMRTSLEEVILQAKILQVGMVTPFLEKVMNPPET
KTLEVALKLLIDLNALDEKENLTPLGFHLAKLPIGPLEGKMIILGAMFSCLSPIMTIAAS
LNFKDPFVMPANKEYQCREIKKEMDEGHQSDHLMVTRAMSKFLLAKQENRAWEFCRENFL
MFNTMNMLHELKSQYAKYLCDLGFIKTPSYTDSEYNKNSNNVKLLKCVLAAGLCPNIAVS
NPKIKTNGRKFSKFITAEDGKVEIHPKSVNSIDSYYESPLLLYHTKLKTTSIFLHDTTMI
YPFPVVLFAKSLKITGEKTDHVTFSLNPQINFTCCSRTAVFIKQVRKRLKWLIDHLMSHP
EEISFNSNSGSGKALRLVVDLVSAEEHPGTLEFPFMF
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atgccgccaatgaaaccttttagagttaataagcaaaccggacctaaagacaaaaataaa
ggtcctagacagcaatcaaaatcatcttcatctaaaaataatcgcgatgatgatgacttc
tttttggacaatgggggtccatcaaatataaatgataaacaaaaatcaagattatctcat
cctccacatttaaaaggaagagaaatcggcttatggcatgctcgtagacaagcaagtttg
aaggaggatgaagaaatgcttgatatggcaagacctaaagtcaagccaccttctcattta
agaggccgtgaattagatatgtggcataaagaacaaaatcgattatggcagaaatccaaa
aagaaagagcaacaaaaagaactaggaaaatgtttcattaagttaagaattgatggaatt
gctcgtatggaaatggacttactaaaacttgaagaagaattgccaattcctgatgaaaac
attaaaccaatcccgtgtattatatcaggttccaaattgaatacaaaagattatagcaat
cataattatagggctttaaatcttttgacattaaaagatgaagatgtagatgaaaatgct
gagtacataatagatagatataaaaaactggaagattcaaattttaaaagaaaattttta
gataacattactggatccatggaagaaaatcttgttgcttctattcaaagtaatatgaaa
cttcaaaatgatgaatcaaaaaatgcatttttgagaaatgaacttgaaaataaacgtaaa
agtgccaagtatagatctatgtgtgaaatcagaaaaaaattgccttcttatagcaaaaaa
gatgaaattttagaattggtccataggaatcaagttatactgataagtggtgaaacaggt
tgtggtaaaactacccaaatggctcaattcattttggatgatgctattatgtcaggtcgt
ggttcaacatgtagaattgtttgtactcaaccaagaagaatcagtgctatttcagtggct
gaacgtgttgctgatgaaagagctgagcgtataggagaagcaagtgttggttatcaaatt
agattggaaagaaaacttggtcgtgaatatggatctatactgttttgtaccactggtatt
ttacttcaacatatccaaagagattcagctttaaattattattcacatattattattgat
gaaatacatgaacgtgacaccattagtgattttactttaactattctcaagagcatcata
cctgttagacctgatattaaagttatattaatgagtgcaacattaaatgcagcagcattt
tctaagtattacaatgattgtccgtctttgaatatacctggattcacatatccagttgaa
gaactatacctagaagatatttatacattaaataggtttagatattttcctaagaaacca
acacaaagatctcgcaaaataaaacctggtgatccatttagtgaatttgtaattccttat
gtaaatgagatgaggcgattcaaaaaatttccctcagcagtattaaattggttggaaaat
ccaatctccgaagatacagattatgaattaattttagaacttatttattacatttgtaat
aataaagatgatggtgcaatacttgtgtttctttctggatgggatcaaatatcaaaaatg
actaaaattttaaaagataaaggctttggaaatacatctcggtatatactaattccttta
cattccatgttacctactgtatctcaaaaatctgtctttgaatcaccacctcgaggtgtt
cgtaagataatactatctacaaacatagcagaaacctcagttactatagatgacgtagtt
tatgtaattgataatggtcggatgaagttgaaaggatttgatgcagaaaataatattgga
actctcaatgaagaatgggtgagtttagctaattctagacaacgtcggggtagagcaggt
cgtgtgagacctggtatttgctatcatttatattcaaaagggcgcgaaagatcatttaat
gattatgtgctacctgagatgatgcggacaagcttagaagaagtaatacttcaagctaaa
atattacaagttggtatggtaacacctttcttggagaaagtaatgaatccaccagaaacc
aaaactcttgaagtagctttaaaactattgatagacttgaatgctttggatgaaaaagaa
aatcttactccattaggttttcatttagcaaagttaccaatcgggccattggaaggtaaa
atgattatcctaggtgcaatgtttagttgccttagtccaataatgacaattgctgctagt
ttaaattttaaagatccttttgtcatgccagcaaacaaagaatatcaatgtcgcgaaata
aaaaaagaaatggacgaaggacaccaaagtgatcatcttatggtcacaagagcaatgagt
aaatttttattagcaaaacaagagaatagagcatgggagttttgtagagaaaattttctt
atgttcaatacaatgaatatgttgcatgaactaaaatctcaatacgctaaatatttatgt
gatctgggatttattaaaacacccagttacacagattctgaatacaataagaattcaaat
aatgttaagcttttgaagtgtgttctagctgctggtctgtgtcccaatattgctgtttct
aaccccaagattaaaacaaatggccgtaaattttcaaaatttattactgctgaagatgga
aaagttgaaattcatccaaagtctgtgaattcaattgatagttactatgaaagtccttta
ttattataccacacaaaactaaagaccacttcaatatttttgcacgataccacaatgatt
tatccatttcctgtggtgctgtttgcaaaaagtcttaaaataactggtgaaaaaactgac
catgttacttttagtcttaaccctcaaataaatttcacttgttgtagtagaacagcagtt
tttataaagcaagtaagaaaaagattgaagtggttgattgaccatttgatgtcgcatcct
gaagaaataagttttaattcaaattcgggaagtggaaaagcgctcagacttgttgttgat
ctcgtatccgcagaagaacatcctggtacattagaatttccttttatgttttaa
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