Rhopalosiphum maidis (corn leaf aphid): 113555124
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Entry
113555124 CDS
T06065
Name
(RefSeq) autophagy-related protein 16-1
KO
K17890
autophagy-related protein 16-1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04136
Autophagy - other
rmd04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113555124
04136 Autophagy - other
113555124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rmd04131
]
113555124
03029 Mitochondrial biogenesis [BR:
rmd03029
]
113555124
Membrane trafficking [BR:
rmd04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
113555124
Others
Specific organelles associated proteins
Auto phagosome
113555124
Mitochondrial biogenesis [BR:
rmd03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
113555124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_EML
NBCH_WD40
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_HPS5
WDR90_beta-prop_4th
WD40_RFWD3
eIF2A
Beta-prop_WDR35_TULP_N
HAP2-GCS1
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
113555124
NCBI-ProteinID:
XP_026815258
LinkDB
All DBs
Position
2:34868342..35023591
Genome browser
AA seq
541 aa
AA seq
DB search
MDWKAVICQQLESRNSRETTTFQNLINFYNKIYDSSLLLRAQNIQLESQIIRGNTGGDFV
YSEKISALEQKLLVQQEELTKLHRRRGENAQMIIDLNAKLQLTEQTLASKNHSLTEHMKL
VASLRAEISLYQKNNSELKQLNQVLKDEHQALQLAFTKLEEKLRAFQDENRELVVRLMTY
KSKDAEKLNEENDHLVRKRNAIMQNELKEAANDMRGVTAECLTTAVSNSIGPIMASPCAM
PSKATIRFDAHDGVVSAVKWSPVDRMVATGGEDRKVKLWDVSKGVAECKGMLIGSNAGVM
SVEFDSTGGQIVAASNDLASRVWTVNDQRLRHTLTGHCAKVMAAKFMGEPNKVVTGSHDR
TLKIYDLRIRACVETKFAMSSCNDLVTSETVGTTIMSGHFDKRIRFWDTRTEKPHTEIEV
QGRVTSLDLSRDCNYLLSCVRDDTLRLVDLRTNKIINTFEADGFKVGCDWTRAVFNLEYD
HVAVGSSEGSVFIWAVSNPEKPLVVLKNEHSAPVTAVSWHQFTNNVASVDRSRRAVVWAD
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggattggaaggcagttatatgccaacaattggagagcagaaactccagggagacaact
acctttcaaaacctgatcaatttctataacaaaatctatgacagttcacttttgttgaga
gcgcaaaatattcagctagaatctcaaattatacgtggtaatactggtggtgattttgtt
tactctgaaaaaatatcagctttagaacaaaaattgcttgtgcaacaagaagaattgacc
aaattacatcgtagacgtggagaaaatgctcaaatgattatagatttaaatgcaaaatta
caattgactgagcaaacacttgcaagcaaaaaccacagtttgactgaacatatgaagtta
gttgctagtttgcgagctgaaatatctttataccagaaaaataactctgaactaaaacaa
ttaaatcaagttctcaaagatgaacaccaagcactgcagttggcttttactaaacttgaa
gaaaaattacgtgcatttcaagatgaaaacagagaactcgtggtcaggttaatgacttat
aaatctaaggatgccgagaagttgaatgaggaaaacgaccatctagtcagaaaacgaaat
gctattatgcaaaatgaacttaaagaagcagctaatgacatgcgtggtgtaaccgcagaa
tgcttgacaactgctgtaagcaatagtattggtccaattatggcatctccgtgtgccatg
cctagcaaagctaccattcgatttgacgctcatgatggtgttgtaagcgctgtgaagtgg
agtccagtagatcgaatggtggcaactggtggagaagaccgtaaggtgaagctgtgggat
gtgtctaaaggtgttgctgagtgcaaagggatgttgattggaagcaatgcaggtgttatg
tcagttgagtttgacagcacaggtggacaaattgtagcagcatctaatgatttggcatcg
cgtgtttggacagtaaatgatcaacgacttaggcacacgttgactggacattgcgccaaa
gtgatggctgccaagttcatgggtgaacccaacaaagtggtgaccggcagccacgaccgc
acgctgaagatatacgatctacgcatcagggcatgcgtcgagaccaagtttgccatgtcc
agttgcaacgacctggtcacatcggagactgttggcacgaccatcatgagcggccatttt
gacaagaggatacgattctgggatacgaggaccgagaagccacatacggagatcgaggtc
caaggacgggtcacgtctttggacttgtccagagattgtaattacctattgagctgtgtc
cgggacgacaccctgcggctggtcgatctcaggacgaacaaaataatcaacacattcgaa
gctgacggatttaaagtgggttgtgattggacaagagctgtgttcaatttagaatatgat
catgtggccgttggatcctctgaaggctcggtgttcatatgggccgtgtcaaatcccgaa
aaaccacttgtagtattgaagaacgaacacagcgcaccggtgacagccgtgtcttggcat
cagtttaccaacaacgtggccagcgtagatcgatccaggagggcagtggtatgggcagac
gtttga
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