Rhopalosiphum maidis (corn leaf aphid): 113555565
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Entry
113555565 CDS
T06065
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04382
Cornified envelope formation
rmd04512
ECM-receptor interaction
rmd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113555565
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113555565
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113555565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rmd04147
]
113555565
00536 Glycosaminoglycan binding proteins [BR:
rmd00536
]
113555565
Exosome [BR:
rmd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113555565
Glycosaminoglycan binding proteins [BR:
rmd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113555565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113555565
NCBI-ProteinID:
XP_026815795
LinkDB
All DBs
Position
3:44381006..44423349
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AA seq
1761 aa
AA seq
DB search
MARGGICRRLGVVVLVIVPCLLLLVQETQQAACRGCTNPFKCDCKGIVGEPGDKGIFGLQ
GSEGPPGETGQDGPPGSKGEKGSFGERGDTGLKGYRGENGLPGSQGIDGDKGYPGVIGPP
GLKGLEGCNGTDGNDGLSGEDGVPGERGLTGLDGLQGLRGDPGDGGANSKGLKGDRGESS
SPGTQGEPGYPGIDGIQGEIGIPGKQGLTGDPGYDGPKGDTGDSQPGSKGAIGDEGDRGE
PGPPGTPVDNDPRLDPPIDDNVYKGQPGERGPKGDSGTPGYKGETGAKGLMGRPGYNGFK
GIKGSQGNVGQRGKDGNVGQVGPSGMKGDKGAPGYSGLAGEDGEKGGIGDPGRVGIPGVQ
GIEGEPGIYDPNLDEIRNGSEGPQGPIGPEGFRGEDGLPGRIGQPGIMGPPGEPGPPGIP
GSRGPKGLSVKGEQGIEGLAGPRGEQGPLGFPGPIGPIGEKGFQGVTVFGPPGEDGRIGR
DGSQGPKGDQGDQGFKGPKGFPATRPGERIVGPRGAPGIPGFSGMPGDPGLPGFPGRDGL
KGLPGDDCGYCNPGINGAKGDSGDDGQNGAPGAPGLAGLTGIRGPKGTMGAPGLPGYKGS
TGRPGSRGLAGNPGMPGERGSVNTGGYSKNFNIGEKGPKGIAGREGNMGSNGLPGAPGLP
GRTGKKGMKGHYGDSGIPGTDGRPGEHGKVGVKGDPADELNPEYLVGDPGYSGIPGAKGE
KGSTGSVGEPGDTSEFISDNKGEKGLKGIIGDEGLHGLQGPKGVEGDQGFVGFPGPAGPP
GIVTEGPPGLKGYPGAMGDQGLKGEDGIPGKPGPPGLPGPPSQKGDRGDPGQSILVGDIG
DDGLKGEKGEPGEEGITGNKGYPGLDGDYGLKGQKGSPGIIGPTGIPGTKGERGISIRGP
AGLPGAPGLAGLSISFGSVGPKGIDGEPGLNGTKGLKGEWGLVGLRGIDGDPGPEGRPGR
SGQMGKLGDTGFTGDIGDNGVPGLKGYEGRQGIFGQIGEKGSRGDFGLQGVPGLRGQTGD
KGPTGNQGLPGIPGIRGDYSFSGPKGENGATGRDGEIGSTGYRGLDGQKGMRGDNGTTEI
GLPGEKGFKGEPGIDGKPGQPGRKGLMGDLGMVGDKGIIGDEGPKGYPGLKGRSAMPGIK
GLPGAPGTPGIPGNKGQRGLEGMPGEIAKPGLPGDIGYRGAIGLEGLKGFKGPSGDPGYE
GFLIGTKGEAGDRGHVHLRGSPGPPGLMGLQGIKGPKGVRGDDGTPGLVGLTGIYGIKGE
EGDTGPEGLPGVPGFNPEHGEKGRSGIDGVPGRPGIDGPKGAPGEYGDDGENGYAGPRGL
SPKGEKGKSGLRGESVQGEPGANGAPGIDGQPGRPGLKGLKGEPGIAKYSQKGEQGEFGP
AGLLGLQGEKGEIGEAGFEGMPGLPGLKGIQGMQGQPGNTGFMGIPGIKGRKGEYGESLY
YNETQLRGQPGDDGPPGLQGLRGLPGDAGFYGRNGLQGERGEAGFPGLAGNKGLKGPKGQ
MGRQGLQGKYGPRGYSGRPGLPGIDALPTKRPPHQGNFFTYHSQTDIIPECPKNTVQLWS
GYSLLHFMGNAKAHGQDLGAPGSCLRKFNTMPFLFCDVNEVCNYGSRNDYSYWLSTPEPM
PLMMTPILGSDISKFISRCSVCEAPTKVIAVHSQSMSIPECPNGWSELWIGYSFIMHTDS
GADGGGQSLVSPGSCLEEFRPRPFIECHGIGRCNFYTTAYSYWLSTIEDRDMFRKPRPQT
LKQNTLQTRISRCSVCLRNRY
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcggcggcatttgccggcggctcggcgtcgtcgttctggtgatcgtcccatgt
ctgctgttgctggtccaagaaacgcaacaggcggcttgtagaggatgcaccaatccattt
aaatgcgactgtaaaggaattgtcggagaacctggtgacaaaggtatttttggactacaa
ggttcagaaggacctccaggagaaacaggtcaggatggtccaccagggtcaaaaggagaa
aaaggatcgtttggtgaacgaggagataccggtttaaaaggatatcgaggtgaaaatggt
ttacctggttcacaaggaattgacggtgataaaggatatccaggtgtaattggaccacca
ggactgaaaggattagaaggatgtaatggaacggatggtaatgacggactttcaggcgaa
gatggagttcccggtgaaagaggtttaacaggactcgatggtctacagggattaagagga
gatcccggtgatggaggtgcaaatagcaaaggccttaagggtgacagaggtgaatcaagt
tcaccaggtacacaaggtgaaccaggatatcctggaatcgatggtatacaaggagaaatt
ggtatacctggaaaacaaggacttactggagatccaggatatgatggaccaaagggtgat
actggtgactctcaaccaggttctaaaggtgctattggagacgaaggagatcggggagaa
ccaggacccccaggtacacccgttgataatgatcctcgtttggatcctcctattgatgat
aatgtatacaaaggacaaccgggagaacgtggtcctaaaggagatagtggaacacctggg
tataaaggcgaaacaggtgctaaaggtcttatgggtcgtcccggatacaatggatttaaa
ggaataaaaggttcgcaaggtaatgttggtcaaagaggaaaagatggcaatgttggtcaa
gttggtcctagtggcatgaaaggcgataaaggagctccgggatactcgggattagcaggt
gaagatggagaaaaaggtggaattggtgatcctgggcgtgtaggaattccaggagtacaa
ggtattgaaggggaaccaggcatatatgatccaaatttggatgaaattagaaatggttct
gaaggacctcaaggacctattggtcctgagggtttcagaggagaagatggattaccagga
aggattggtcaaccaggaattatgggaccacctggtgaaccaggacctccaggtattcct
gggtcaagaggtccaaaaggattatctgtaaaaggagaacaaggaattgaagggttggct
gggcctaggggagaacaaggacctctaggatttccaggacctattggtccaatcggcgaa
aaaggatttcaaggcgtaactgtgtttggacctcctggtgaagatggtcgcattggtcgt
gatggttctcaagggcctaaaggagaccagggtgatcaaggattcaaaggaccaaaaggt
ttccccgcaacacgtccaggagaacgaattgttggaccacgcggagctcctggtatccca
ggattttctggtatgcccggagatcccggacttcccggatttcctggcagagatggttta
aaaggacttccgggtgatgattgcggttattgcaatccaggcattaatggagcgaaaggt
gattctggagatgatggacaaaatggtgctccaggagctccaggacttgctggtttaact
ggaatacgaggaccaaaaggaacgatgggcgcacctggattaccaggttataaaggatct
actggaagacctggatcaagaggattggctgggaaccctggaatgccaggagaaagagga
tcagtcaatacaggtggatattctaaaaacttcaacataggtgaaaagggtccaaaagga
attgcaggcagagaaggcaatatgggttcaaatggcttacctggagcacctggattacca
ggccgtacgggtaaaaagggaatgaagggtcattatggagattcaggaatacccggtacc
gatggccgtcctggagaacatggtaaagttggagttaaaggagatcctgctgatgaatta
aatcctgaatacttagtaggagacccagggtattctggtattcctggagctaaaggtgaa
aaaggtagtacaggttctgtaggagaacccggtgataccagtgaatttataagcgataat
aaaggagaaaaaggccttaaaggcataattggtgatgaaggtctacatggacttcaagga
ccgaaaggagtagaaggagaccaaggttttgttggatttcccggtccagccggtcctcct
ggtatagttactgaaggtcctccagggttaaaaggatatcctggagctatgggtgatcaa
ggtttaaaaggagaagacggtattccaggaaaaccaggtccaccaggattaccaggtcca
cctagtcaaaaaggggaccgtggagatccaggtcagagcatattggttggagatattggt
gacgatggtcttaaaggagaaaaaggtgaacctggagaagaaggaattactggcaataaa
ggttatcctggtttagatggagattatggtctaaaaggtcaaaaaggcagtcctggtatt
ataggtccaaccggaattccgggtacaaaaggcgaacgaggaatatcaatcagaggacct
gctggattacctggagcacccggattagctggattatcgattagttttggatcagttggt
ccaaaaggaattgacggcgaacctggcttaaatggaactaaaggattaaaaggagaatgg
ggattagtaggactcagaggaatagatggtgacccaggtccagaaggtagaccaggaaga
agtggtcaaatgggaaaattaggtgacactggtttcactggtgatattggtgacaatgga
gttccaggattaaaaggttatgaaggaagacagggtatttttggtcaaattggcgaaaaa
ggaagccgtggagatttcggtttgcaaggtgtgccaggattaagaggacaaacaggtgat
aagggacctacaggcaaccaagggcttcctggaattcctggtataaggggagattattca
tttagtggtccgaaaggtgaaaatggtgccacaggaagagatggtgaaatcggttctact
ggttatcggggattggacggccaaaaaggtatgcgtggtgacaacggaacaacagaaatt
ggattgcccggtgaaaaaggttttaaaggagaacctggcattgatggcaaacctggacaa
ccaggacgaaagggtttaatgggagacttgggtatggtaggagataaaggcatcattgga
gacgaaggtccaaaaggttacccaggattaaaaggacgatctgccatgccaggaataaag
ggacttcctggagcacctggtacgcccggtattccagggaataaaggccaacgtggatta
gaaggcatgcctggtgaaattgcaaaaccaggtttacctggagatataggatacagaggt
gcaattggtttagaaggtttaaaaggattcaaaggaccttctggagatcccggttatgaa
ggtttccttattggaacaaaaggagaagctggagatcgaggtcacgtgcatttaagaggt
tcaccaggtccacctggtttaatgggactacaaggaattaaaggacctaaaggtgtaaga
ggtgacgatggaactcctggactcgttggacttacaggaatatatggaattaaaggagaa
gaaggtgacactggtcctgaaggtctgccaggtgttcctggcttcaacccagaacatggt
gaaaaaggaagaagtggcatagacggagttcctggaaggcctggtatagatggaccaaaa
ggagcacctggagaatatggagatgatggggaaaatggatatgctgggccacgtggatta
agtccgaaaggagaaaagggaaaatctggtcttagaggtgaatctgtccaaggcgaacca
ggagctaatggtgctccaggaattgatggacaacccggtagacctggattaaaaggtctg
aaaggtgaacccggtattgcaaaatatagccaaaaaggagaacagggcgagtttggtcca
gctggattacttgggttacagggtgaaaaaggtgaaattggagaagctggatttgaagga
atgccaggtcttcctggtttaaagggaatacaaggtatgcaaggacaacctggaaataca
ggatttatgggaatacctggaattaaaggcagaaaaggagaatacggcgaatcgttgtat
tataacgagactcaacttagaggacaacccggtgatgatggacctccgggattacaaggg
ttacgaggactacctggtgatgctggattctatggacgtaatggcttacaaggagaacgt
ggtgaagctggtttccctggcttagctggaaataaaggtctaaaaggtcccaaaggacaa
atgggaagacaaggacttcaaggaaaatatggtccgagaggatattctggtcgtcctgga
ttgcctggtattgatgctctgccaacgaaacgaccgccacaccaaggaaacttcttcaca
tatcattcccaaacggacattattccagagtgtccaaagaacacagttcaactttggtcg
ggttattcgcttttacattttatgggaaacgccaaagcacatgggcaagacttaggtgca
ccgggtagttgtttgagaaaattcaatactatgccattcttattctgtgatgtaaacgaa
gtatgtaattacggtagtaggaacgattacagttattggctaagcactcctgaaccaatg
cctttgatgatgacaccaattctaggttccgatatttctaaattcatatcaagatgttct
gtgtgtgaagctccaacaaaagtaattgcagtgcacagtcaatcgatgtccatacctgaa
tgtccaaatggttggagtgagttgtggattggatacagttttatcatgcacaccgattcc
ggtgctgatggtggtggccaatcgttggtcagcccggggtcttgcttggaagagtttaga
ccaagaccgtttattgagtgccacggaataggacgttgtaacttctacaccactgcttat
tcgtattggttgtctacaatcgaagatcgtgatatgttcaggaagccccggccccagaca
ctcaaacaaaatacgttgcaaacgcgtatcagcaggtgttcggtgtgtctgagaaaccga
tactga
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