Rhopalosiphum maidis (corn leaf aphid): 113555635
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Entry
113555635 CDS
T06065
Name
(RefSeq) nipped-B-like protein isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113555635
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
113555635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
113555635
NCBI-ProteinID:
XP_026815896
LinkDB
All DBs
Position
3:48100227..48118132
Genome browser
AA seq
1940 aa
AA seq
DB search
MYRPTHNSNLQYDLKVGYNDGHQRTIAMNGEIPSVPITTLAGISSLTDLLPEMPLPSPMP
QTLGNKSLLFHPRVAEEADILLSLRDDTLVPQLIQSLINTSSDHIQLKDKYMYTEHYNNQ
QNIPELLKAILHQNANVFRGPPAIFQQQQEKEKNIETKTVHELNEINSFESALIEQHDLS
HNELLQQSEILNELPHQQQPVIVRTPPAKLSRLLLDEEENDKINVQNLERQFSQITNNYD
VFLNQPTISLTRIDLSQHVVNKKNMINMEELTEDNDFGLALAERPSITNQDKRSFPSQVE
NESSDPNDFGVSLTERIKRRKRAAQQSEVNDKNNSFDENECIIKPKLRKVERKFVPAVEK
LSVEELMETNTYQKFNKCIEKVFESTEEVDTLLDFGENDIPPEALIPKYVLQELCSESAK
LKTLGAMESIPSNKIIRILSILEKNIRDGAKVSPIADPEDDECERKLWMELAMERVMRAV
DASLTTLYVLTSPRMQKKVYMEDVIDRVVMFTKYQLHNTIYPAFDPVYRIHKSNDSYAGS
ARKKRAHPKEVRDKNVLSLYTKLAEVVSLLAELLQIQTLTDTAVLHTSSMAVSPFFVEEI
SELQLSALKLVTTIFTKYDKHRKLLLDDILASMARLPSSKRSLKSFRISSEEYIQMLSAL
VLQLIQCMVVLPSNLADKQSNLDPDTLIISKFKTARSTASSFLHVFLSKCSSKSEEIDYR
PIFENFIQDLLTTVNKPEWPASELMLSVLGRLLVANFVNKNLDMSLRVASLDYLGVVAAR
LRKDSVTSQLRLKTIDSIIMDIRTEELKDEDGNLMEEVQEVQDDEERIQFLQRVLLDYLA
IRSLSEPALRHARHFYLAQWYQDNTDAGKSTDSLSKRKKEKQSRKKFGSDDEDDGESSDS
SKENESRIDANKAVENSRLCDQRKEYLLTKINPYDNQSTQVMQTYIDYDSAELVARYLAS
KRPFSQSFDTYLKHIIKVLMETSVNIRTKAMKCLTMIVEVDPGVLGLKEMQLGVSHSFLD
HSTSVREAAVDLVGKFVLSRPELIDKYYDMLSTRILDTGVSVRKRVIKIMKDICIECPDY
PKIPEICVKMIRRVNDEDGIKKLVMEVFQNMWFTPVREKPTLDTKMLLRKVLNITDVVAA
SKELGLEWFEQLLLSLFKPKEDKDDTAKVSTEPPKALLTACKQIVDCLVENVVTLDGGGG
GTSQQLVACLTTLYLFAKIRPQLLATHSLTLQPYLSLKCQTQGDYQIISCVARTLELVVP
LIEHPSEIFLSQLEEDAVKLIMKHDQTVILSCISCLGSVVNNVTRNFKLIRDCFGIYYKY
LSNFQKLHQDRQTNPQGLIPLRPIFRRSIYIIGLMLRFFDFTDKDVYGDAYPDNIRDLVY
DIMSYFMHTNEDDTKLFALKAIGSICIRHYDFMLCQDLMNTYLDILSNNSVANIMKSQIL
NNIEIYLEEEEKRMIKQDLEWSKMSKKENLKEMGDVSSGMASTVIQLYLKGILNSFLHTS
VQVRQAVLKVIQLILAQGLVHPVQIVPYLICMSTDTEKSVSSRADKHLQEIEKKYPGFIH
MGAQNGIKLSFQLQSIVQTDGEMVRGYRLKENDTIPSALNGCLYSILRTKQQRRALVLSI
LKQFEDQGKTNLAQMLYLADNLAYFPFQSQDEPLFIIHHINTMISVNGTNLLQNFREGLL
PNPNAPVQSNKVEGGVEDEEDEDEGTLVDRVPDDITNLQEVLIKSQGCLLLLVLKLYLKT
VYGITDLKITQYSPSESSKMYDKNLSRKSNSKFNPKATIQKLKYGLEINTEDLQKAKSEL
IAYYLELKHLIINLDPDDEGNEDAGTPKASKSVPSTPSNHVGSTPTQIQNTPNHNDVSNV
SYESPEYQKQNNVQSTPKVPKLTIIPPKPPSSKHSHHHHRSHKSKKADRPKKHHHKRKKA
KGGGSSEDSDNVYSDPDFLI
NT seq
5823 nt
NT seq
+upstream
nt +downstream
nt
atgtacagaccgacgcacaacagcaacctgcaatatgacttgaaagtagggtacaacgat
ggtcatcaaaggaccatagcaatgaacggggaaattcctagtgtacctataacaactctg
gctggcatttcaagtttaacagatttgttacctgaaatgccactgccttcacctatgcct
caaacattaggtaataaatctttactatttcatccccgtgtagccgaagaagccgatatt
ttacttagccttcgagatgatactttggtacctcaattaattcagtctttaattaatacc
tcatcagaccatatacaattgaaagataaatatatgtacacagaacattataacaatcaa
caaaacatacctgaacttcttaaagcaatattacatcaaaacgctaatgtatttagagga
ccaccggcaatatttcaacaacagcaagagaaagaaaaaaatattgaaaccaaaactgta
catgaactcaatgaaattaatagttttgaatcagcattgattgaacaacatgatttatcg
cataatgaactattacagcaatctgagattttgaatgagcttccacatcaacagcaacct
gttatagttagaacacctcctgcaaaattatccagattgttattagatgaagaagaaaat
gataaaataaatgttcaaaacttggaacgtcaattttctcaaataacaaataattacgat
gttttcttaaatcaaccaacaatttcattaactcgaatcgatcttagtcagcatgttgtg
aacaaaaaaaacatgataaatatggaagaactgacagaagataatgattttggattagct
cttgcagagagaccttcaattacaaatcaagataaaagaagttttccttcacaagttgaa
aatgaaagttctgatccaaatgattttggggtatcattgactgagagaattaaaagaaga
aaaagagctgcccaacaatcagaagtcaatgacaaaaataatagttttgacgaaaatgaa
tgtattataaaacctaaattaagaaaagtcgaaagaaaatttgtaccagctgttgaaaag
ttatctgtagaagaactaatggaaactaatacatatcagaagttcaataaatgcatagaa
aaagtatttgagagcactgaagaagttgatacattgctagattttggggaaaatgatatc
ccgccagaagctttaataccaaaatatgttcttcaagaattatgtagcgaatcggctaaa
cttaaaacactaggcgctatggaatcaatcccatcaaacaaaataattcgtatattaagc
atacttgaaaaaaatattagagatggtgcaaaagtatctccaatagctgatccagaagat
gatgaatgtgaaagaaaattgtggatggagttagcgatggaaagagttatgcgagctgta
gatgcatccctcactaccctttatgtgttaacttcgccaagaatgcagaaaaaagtttac
atggaagatgttattgacagagtagtcatgttcactaagtatcaactacataatacaatt
tacccggcgtttgatcctgtctataggatacataagagtaatgattcttatgcaggaagt
gcacgtaaaaaacgtgctcatccaaaagaagttcgtgataaaaatgttctgtccctatat
accaagttggcagaagtagtttcgcttttggctgagttgttacaaattcaaactcttact
gatacagctgttcttcatacttcttcaatggcagtttcgcccttttttgttgaagaaatc
agtgaattacaactttctgcattaaaactagttacaacgatatttacaaagtatgacaaa
caccggaaattactattagatgatatactagcatctatggcacggttgccaagttcaaag
cgaagtttaaaatcatttcgaattagttctgaagagtatattcaaatgttatcagctcta
gtcttacagttaattcaatgcatggttgtacttccatctaatttagcagataaacagtca
aatcttgatcctgatacattaattatcagtaaattcaaaactgctcgttcaactgcatca
agttttttgcacgtgtttttatcaaaatgtagtagtaaaagcgaagaaattgattaccgt
ccaatatttgaaaattttattcaagatctattaactactgtgaataaaccagagtggcca
gcatctgaacttatgcttagtgtacttgggaggctattagttgctaactttgttaacaaa
aatttagatatgtctcttagagtagcctccttagactatcttggtgttgtagcagctaga
ttgagaaaggattctgttacatcccaattaagattaaaaactattgattctataattatg
gatatacgaacagaagagctgaaggatgaagatggtaatttaatggaagaagttcaagaa
gttcaagatgatgaggaaagaatacagtttttgcaaagagtgcttttggattatttggct
attagaagtctttcagaaccagctttaaggcatgcacgacatttctatttagctcagtgg
taccaagataatactgatgctggaaaatcgactgactctttatcaaaaagaaaaaaagaa
aaacagtcgcgaaaaaaatttggttcagacgatgaagatgatggcgagagtagtgattca
agcaaagaaaatgaatctcgaatagatgcaaataaagctgttgaaaattctcgactttgt
gatcaaagaaaagaatatttgctaactaaaatcaatccttatgataatcaatctacacaa
gttatgcaaacatacattgattatgatagtgctgaattagttgcaagatatttagcttct
aaaagaccattttctcaaagttttgatacttatcttaagcatattatcaaggttttgatg
gaaacctctgtaaatataagaacaaaagctatgaaatgtttaacaatgattgttgaagtt
gatccaggtgttctgggcttaaaagaaatgcaattgggtgtaagccattctttcctagat
cattcaacttcagttagagaagctgctgttgatttagttgggaagtttgttttgagtcgt
ccagaattaattgataaatattatgacatgttatccactcgaatattagacacaggtgtc
agtgtacgaaaacgagtgataaaaataatgaaagatatatgtattgaatgtccagactac
ccaaaaattccagaaatatgtgttaaaatgatacggcgcgtaaatgacgaagatggcatt
aaaaaattagttatggaagtgtttcaaaatatgtggtttactccagtacgagaaaagcct
actctagatacaaaaatgttattgaggaaagtcttaaacataactgatgttgtagcagca
tcaaaagaattgggcctagaatggtttgagcaattattattaagtttgtttaaacctaaa
gaagataaagatgacacagcaaaagtatctactgaacctccaaaagctttacttacagct
tgtaagcaaattgtagactgtttagtggaaaatgttgtaacacttgatggtggcggtgga
ggtacatcacaacagcttgttgcttgtcttactacattatatttattcgctaaaatacgg
ccacaacttttagctacacattctctcactcttcaaccatatttgagtttaaaatgccag
acacaaggcgattatcaaattattagttgtgtggcaaggacacttgaacttgttgttcca
ttaatagaacatcctagcgaaatatttttatcacaacttgaagaggatgcagtcaaactc
atcatgaagcatgatcaaactgtgattttaagttgtatatcgtgtcttggatctgtagta
aataatgtaacaagaaattttaagctcatccgggattgttttggaatatactataaatat
ttaagtaattttcaaaaattacaccaggatagacagacaaatcctcaaggtttaatacca
ctacggccaatatttcgtcgttcaatttatattattggactaatgttaagattcttcgat
tttacagacaaagatgtgtatggtgatgcatacccagataacattagagatttagtgtat
gacataatgtcatattttatgcatacaaatgaagatgacactaaattatttgctttaaaa
gcaattggatcaatatgtataaggcattatgattttatgttatgtcaagatcttatgaac
acataccttgatattttatcaaacaatagtgtcgcaaatataatgaaatctcaaattttg
aataacattgaaatatatttggaagaagaagaaaaaagaatgatcaaacaggatttagaa
tggtcgaaaatgtctaagaaagaaaatttaaaggaaatgggtgacgtatcttctggaatg
gctagtacagttattcagttgtatctcaaagggattttaaattcgtttttacatactagt
gttcaagttcggcaagctgtactcaaagttatacaattaattttagcacagggacttgta
catcctgttcagattgtgccttatcttatatgtatgagtaccgatacagaaaaatcagtt
agcagtcgtgctgataaacatttgcaagagatagaaaaaaaatatcctggatttatacac
atgggtgctcaaaatggaataaaattatcatttcagttacaaagcattgtacaaaccgat
ggtgaaatggtccgaggatatcgtttaaaagaaaatgacactatcccaagtgctttaaat
ggatgtctatattctattctaagaactaaacaacaacgcagagctctagttttgtcaatt
ttaaaacaatttgaagatcaaggcaaaacaaatttagctcaaatgttatacttagcggat
aacttggcatattttccatttcaatcgcaagatgagcctttatttattatacatcacatt
aatacaatgatatcggtcaatggaactaatttgcttcaaaactttagagagggtcttctt
cctaatcctaatgcaccagtacagtctaataaagtagaaggtggtgttgaggatgaagaa
gatgaagatgaagggacacttgtagacagagtacctgatgatataacaaatcttcaagaa
gttcttattaaatctcagggttgtcttctacttttagttcttaaactttatctgaaaact
gtttatggaataacagatttaaaaataactcaatattcaccttcagaatctagtaaaatg
tatgataaaaatttaagtagaaagtcaaattcaaaattcaatcctaaagctacgatacaa
aagcttaaatatggattagaaataaatacggaagatttacaaaaggctaaatcagaattg
attgcttattatttagaattaaaacatttgattatcaatcttgatcctgacgatgaagga
aatgaagatgctggaactcctaaagcttcaaagagtgttccatccacaccaagtaatcat
gtaggtagtacacctactcaaatccaaaacacgcccaaccacaatgatgtttctaatgta
tcttacgaatcgccagaatatcaaaaacaaaacaatgtgcaatcaacaccaaaggttcct
aaattgacgatcatacctccaaaacctccatcgtctaagcattctcatcatcatcatcga
tcacataaatcgaaaaaagctgatcgtcctaaaaaacatcatcataagcgaaagaaagca
aaaggtgggggcagttctgaagatagtgacaatgtctatagcgatccagatttcttaata
taa
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