Rhopalosiphum maidis (corn leaf aphid): 113555710
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Entry
113555710 CDS
T06065
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113555710
03036 Chromosome and associated proteins [BR:
rmd03036
]
113555710
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113555710
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
113555710
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
SH2
HHH_9
S1
HHH_3
Spt6_S1
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
113555710
NCBI-ProteinID:
XP_026816026
LinkDB
All DBs
Position
4:43811459..43824082
Genome browser
AA seq
1814 aa
AA seq
DB search
MSQFLDSEAEESEDDELDEIDKKKAKKIKAMESDDDDDEDDEDKIREELKDLIDDNPIEE
SDGSGDESDGSKKRKKSDDDFDDRLEEDDYDLIEENLGVKVERRKRFKRLRRLEDEESDD
EGTGENATEDREAIANTLFDMSDNEEERTTDRVSSRAERVDNYDVEGDEEGEGYSDEDDD
GFIVDDEGRPIKEKKKKRKHIYHDAALQEAQDIFGVDFDYDEFEKYDDEYEDDVSDDDYL
EDEEDGERRQRPKPQKRRKATRKSIFEIYEPIELKRGHFTDLDNQIRNNDIPERMQLREV
PVTPVPEGSDELDDEADWIYKQAFCKPTITTQEHKGGVDPRLQSKKGPQTIGKIKKALDF
MRNQNFEVPFLAYYRKEYVEPELDINALWKVYHFDAKWCQLKSRKTMLIELLEKMRNYQM
EMLMKDTDAPMPDHVRIIKDEDIDKLRAVQTNEELKDIQGHFMLYYANDVPAMQESARKK
SREMKRKARELREERRKLAIEAGEEVPDDDGDTGNLDDEDSNVETVKPASSSGPYTMCLK
SGLAGFAKRFGLKPEHFAANVRDNYQRHEVDQESVDPYKLAGEYCNELLKTPEEVLKAGK
YMVACQLSREPLIRKCLRETFFDRAKINIVPTKRGIKEIDENHNCYSMKYIRRKPVRDLV
RDDFLKLQMAEDDKLLTISFDEEVDGLGSLPYIEEVKQLYIRDEFSSNVQQWNDVRRECV
DLAFRKLLMPEMVKELRRSLLAEAKEHVLKSCKQKLSNWLAVGPYKPEVDEDDDDWDTSK
GIRVMGLAYSPDHEQASFACILSTDGEVVDHLRLPYIMKRPFNDDVKAKRDGDFNHIRNF
IIFKKPHVIVIGAESRDALWLVRDIKAVVDQLVVDEQFPQIQVEILDNHLARIYANSIKG
ENEFRDYPQLLRESISLGRRMQDPLVEFSQLCTTDDEILCLRYHQHQEVLSQEELLEGLY
QEFINRTNEVGVDINDVVQRVYAPNLLQFVCGLGPRKATALIKLMKQTNQRLENRTQLVT
ACHMGPKIFINCAGFIRIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDALEYDDE
EANPAGALEEILDAPERLKDLDLDAFAEELERQGFGNKSITLYDIRQELNHRYKDIRVAY
KPPNPAQVFELLTKETQETFFVGKMVLSTVTGIARRKPQNDQLDKANPVRNDETGLWQCP
FCFKNDFLELSDVWNHFDAGGCPGQASGIRIRLDNGISGFIAMKNLSNTHVANPEDRVRF
NQAIHCRIIKIEPDRFSFEATSKSSDLKDQEHQWRPQKDPYYDHETESRQRKTELDKNKI
KNAQTYIKRVIVHPCFHNVSFAEAVKLLNNSDQGDAIIRPSSKGADHLTVTWKVADNVYQ
HIDITEKGKVNAFSLGRSLWIGTEEFEDLDEIIARHITPMASNARELLRFRYYRDTDGGN
IEKAEQILREEKTNNPSKIHYIVSVSQKYAGKFLLSCLPTRRSKHEYITVTPEGYRFRSQ
NFDSIGSLFRWYKEHFRDATPHVTPVASRSAGQNYGPSPHTEPSPMNRSHSSHSNATPQY
SQSPHASYNNMQPSAYNTPYTPSGQTPYMGNYATPRYGAAQAPVHDGVFLHPSSLTPVVQ
SSPKPSSSRPPVQSADPSDWRRMAEEWAKAKQRGDGGYSTPMSDGGGRHTPRSRYNNHRY
NMNRERESSTPRSDAPSPTPSASSYGYHSPAPSKNYKSSYTASSHNSSKSPRGPSSNSGT
PYDPFTMDPGQDSPGVYASSSRSGRNDENDPDLRYASPGSRWTPRSGRSTPHTINSPRSM
IESSMGDNTPLYED
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtttctagattctgaagcggaggagagtgaagatgacgagttggacgaaatt
gacaagaaaaaagcaaagaaaattaaagcaatggaaagtgatgatgacgatgatgaagac
gatgaagacaaaattcgtgaagaactgaaagacttaattgacgataatccaatcgaagaa
agtgatggttctggcgatgaatcagatggttcaaaaaagagaaaaaaatcagatgatgac
tttgatgatcgattggaagaagatgattatgatcttattgaagaaaatcttggcgttaaa
gtggaacgaagaaaacgattcaaaagattaagacgtttagaagatgaagaaagtgatgat
gaaggtactggtgaaaatgctacggaagatagagaagctattgctaacactttatttgat
atgtctgacaatgaagaagaaagaacaactgatcgtgtttcttcaagagctgaaagggtt
gataattatgatgtagaaggcgatgaagaaggagaaggatattctgatgaagatgatgat
ggatttattgtagatgatgagggacggccaattaaagagaaaaagaaaaaacgtaaacat
atatatcatgatgctgctcttcaagaagcacaagacattttcggtgttgattttgactat
gacgaatttgaaaaatatgatgacgagtatgaagatgatgtatctgatgacgactattta
gaagacgaggaagatggtgagagaagacaaagaccaaaacctcaaaaacgtagaaaagct
actagaaaatcaatttttgaaatatatgaaccaattgagttgaaaagaggtcattttacg
gacttagacaatcaaattcgtaataatgatataccagaaagaatgcaactacgtgaagtt
ccagttacaccagttcccgaaggttctgatgaattagatgatgaagcagactggatatac
aaacaagcattttgcaaaccaactattactactcaagaacacaaaggtggtgttgatcct
cgacttcaatccaaaaaaggacctcaaacgattggaaaaattaagaaagcattagatttt
atgcgtaatcaaaactttgaagttccatttttagcatattacaggaaagaatatgttgaa
cctgaacttgatatcaatgctttgtggaaagtttaccattttgatgctaagtggtgtcaa
ttaaaatctcgcaaaactatgctgattgaattattggaaaaaatgcgaaattatcaaatg
gaaatgttaatgaaggatacagatgctcctatgcctgatcatgttcgcattattaaagat
gaagatattgataaactacgtgcagtgcaaacaaatgaagaactaaaagatattcaaggt
cattttatgttatattatgccaatgatgtccctgctatgcaagaaagtgctagaaaaaaa
tcgagagaaatgaaaagaaaagctagagaactaagagaagaaagaagaaaacttgcaata
gaagctggtgaagaagtccccgacgatgatggagatactggtaatttagatgatgaggat
tcaaacgttgaaactgttaaacctgcaagtagttcggggccttatactatgtgcctaaaa
tcaggacttgctgggtttgctaaacgttttggcttaaaacctgaacattttgctgcaaat
gttcgtgacaactaccaaaggcatgaagtagatcaagaatctgtagatccatataagctt
gcaggtgaatactgcaatgaattattaaaaacccctgaagaagttttaaaggctggcaaa
tatatggtggcatgtcaattatctcgtgagccactcataaggaaatgtctgagagagact
ttctttgatcgtgctaaaattaatattgtaccaaccaaacggggtatcaaagaaatcgat
gaaaatcataattgttattcaatgaagtacattcggcgtaaaccagtaagagatttagta
agagatgactttttaaagttacaaatggctgaagatgataaattacttactatttcattt
gatgaagaagtagatggtctaggttcccttccctatatagaagaagtcaaacagctttat
attagagatgaatttagttcaaatgtacaacaatggaatgatgtgaggcgtgaatgtgtt
gacttagcttttagaaaattattaatgcctgaaatggtaaaagaactcagacgttctcta
ctagctgaagctaaagagcatgtattaaaatcttgcaaacaaaaattatcaaattggcta
gctgtaggtccttataaaccagaagtagatgaagatgatgatgattgggatacaagtaaa
ggcattagagttatgggattagcatattcgcctgatcatgaacaagcatcatttgcatgt
attttgtcaactgatggtgaagttgttgatcatttacgtttaccatatattatgaaaaga
ccattcaatgatgatgtaaaagcaaaaagagatggagatttcaatcatataagaaatttc
ataatttttaaaaaaccccatgtcatagtaattggagcagagtctagggatgcattatgg
ctagttagagatattaaagcagttgttgaccaactagttgttgatgaacaatttcctcaa
atacaagttgaaattttggataatcatctagctagaatttatgccaattctattaaagga
gaaaatgaatttagagattatccacaacttttacgtgaatccatatctttaggacgtaga
atgcaagatcctttagttgaattttctcaattgtgtacaacagatgatgaaatattatgt
cttcgctatcatcaacatcaagaagttttgagtcaagaagaattactcgaaggtttatac
caagaatttattaatcgtactaatgaagtgggtgttgatataaacgatgttgttcaacga
gtttatgcaccaaatttattacaatttgtctgtggtttgggacctcgtaaagccactgca
ttaattaaactaatgaaacagacaaatcaacgattggaaaatcgaacccaattagttact
gcatgtcatatgggccctaaaatattcataaattgtgctggatttattagaattgatacc
aattctttgggtgacagtactgaagcatatgtagaagtcttagatggatctagagtacat
ccagagacatatgaatgggccagaaaaatggctgttgatgctctggaatatgatgatgaa
gaagcaaatccagcaggagctctagaagaaattttagatgctccagaaagacttaaagat
ttagatttggatgcatttgctgaagaattagaaagacaaggttttggtaataaaagtatt
acactttatgatatacgccaagaattaaaccaccgttataaagatattagagtagcatat
aaacctccaaatcctgcacaagtttttgaactattaactaaagaaacccaagaaacattt
tttgttggaaaaatggttttatctactgtcactggaattgcgcgtaggaaaccacaaaat
gatcaactggacaaggcaaatccagtgagaaatgatgaaactggtttatggcaatgtcca
ttttgttttaagaacgacttccttgaattatcagatgtatggaaccattttgatgctggt
ggctgcccaggtcaagcttcaggaattcgtataagattagataatggtataagtggcttt
attgcaatgaaaaatttatcaaatactcatgtagccaaccctgaagatcgtgttcgtttt
aaccaggcaatacattgtaggattatcaaaattgaaccagatagattttcatttgaagcc
acttctaaaagctcagatttaaaagatcaagaacaccaatggcgaccccaaaaagatcct
tattatgatcatgaaactgaaagcagacaacgaaaaacagaattggacaaaaataaaata
aaaaatgctcaaacatatattaaacgtgtaattgttcatccatgtttccacaatgtatca
tttgcagaagctgttaaattattaaataactctgaccaaggagatgctattattagacca
tctagtaaaggagctgaccatttgactgttacctggaaagtagctgataatgtttaccaa
cacattgacataacagaaaagggcaaagtcaatgctttttcgttagggcgttctctttgg
attggtactgaagaatttgaagacctagatgaaattattgctcgtcatattactcccatg
gcaagcaatgctagagaattattacgatttaggtattatcgtgatacagatggaggcaat
attgaaaaagctgagcaaattcttcgagaagaaaaaactaataatccttcaaaaatccat
tacattgtatctgtctctcagaaatatgcaggcaaatttcttctatcatgtttacctact
cgtagatcaaaacatgaatatataactgttacaccagaaggttatcgtttccgtagccaa
aatttcgattctattggatctttattcagatggtacaaagaacatttccgagatgctaca
ccacatgtaacaccagtagcgtctcgatctgcaggacaaaattatggaccttctcctcat
acagaaccttcaccaatgaatcggagtcatagtagccactcaaatgctacaccccaatat
tcacaatcaccacatgcatcatacaacaacatgcaaccatctgcatataacactccgtac
acgccatcgggtcaaactccttacatgggcaattatgctactcctcgttatggtgctgct
caagcaccagttcatgatggtgtatttttgcaccctagctctctcacaccagttgttcaa
agcagtccaaaaccatcttcctctagaccacctgtacaatcagcagatccaagtgattgg
cgtcgaatggctgaagaatgggctaaagctaaacaacgaggtgatggaggatattctaca
cccatgtcagatggaggaggacgacacacacctcgtagcaggtacaacaatcatcgatat
aatatgaacagagaaagagaatcaagtacaccacgcagtgacgctccatcacctacccca
agtgcctcatcatacggatatcattcaccagcaccatcaaagaactacaaaagtagttat
acagcatcttcacataattcatcaaagtcaccgcgaggtccatcatctaattctggtaca
ccatatgatccttttacaatggacccggggcaagactctcctggagtatatgcatcatca
tctcgttcaggacgcaatgatgaaaatgatccagacttgagatatgcatcacctggttca
aggtggaccccacggtctggtcggtcaactcctcataccattaatagccctagatcaatg
attgaatcttctatgggcgataatacaccactgtatgaagactaa
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integrated database retrieval system
