Rhopalosiphum maidis (corn leaf aphid): 113556060
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Entry
113556060 CDS
T06065
Name
(RefSeq) Bloom syndrome protein homolog isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03440
Homologous recombination
rmd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113556060
03460 Fanconi anemia pathway
113556060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rmd03032
]
113556060
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113556060
Enzymes [BR:
rmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
113556060
DNA replication proteins [BR:
rmd03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
113556060
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
113556060
Bloom's syndrome complex (BTR)
113556060
FA (Fanconi anemia) pathway
113556060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
Helicase_Sgs1
DUF6017
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
113556060
NCBI-ProteinID:
XP_026816582
LinkDB
All DBs
Position
3:33281932..33292195
Genome browser
AA seq
1131 aa
AA seq
DB search
MSFQLKKPSVVLKNLSSIVEKKKDQKVTSTKSLFCELSSQKEENKKGHKTTFKSDIDDLT
TTEYMSYEQLQNTLFKDSSQNTIEKKSLNKPSIKTLESQDPNKKENIINETIGCTVKTNK
KSSFNKATSISEKSEILYDTQNTERNNSDSNVSKEILFHNENINELDVTSISTIPKLEAH
IKSLEKIEYEMLQKVFNMFVSIPEKLAINIPGLRDPSSLPHLKKVRQKIKNKLKVAKAQL
KNQQKISEVKNSSVLDDIFVASDKDEKCINIMSENIFDDIQLVHDKNSCFSINLNKNSQI
NPENKVKNLPCTITSLKNNSEENDYKTGVSSTLNCQKSTTSSQTINKTIHDCTYQSIQID
CINTSCNKNQYSNTNSPIMEFTKTDYNFSWELLAVFKKTFGLRHFRPNQFEAINAALLGH
NCFILMPTGGGKSLCYQLPAVISKGITVVISPLKSLIIDQTQKLKSLDIPAAHLLSGITP
DEENTIFSELWGADPGLKLLYVTPEKVAVSNKLTQVLNNLHCRNLLARIVIDEAHCVSQW
GHDFRPDYKRLDVFKQNYQNVPIMVLTATATQRVRKDVLHQLNIEEIKWFVSSFNRPNLI
YEVIPKKGKASLLEIANLIKSKFARQSGIIYCMTKKECDNTALFLSGEGIKAASYHAGLT
DKKRNDVQMQWTSNKSNVVCATIAFGMGIDKPDVRYVIHYSLPQSIEGYYQESGRAGRDG
DTAYCLLYYNYSDMHRIKKLIEIGGGATYETKKVRFHNLCRIVSYCENKMDCRRALQLNY
FDEHYDKAQCIANETTTCDNCRIKQSIKLIDVTEESINLIKAIQEICGSSNNFTFTHFVD
IFKGKKTQKVVLYGHEHSNIFGKGLHWDRHDIERLIHKLILESYLSEEMVAFKSDIMNAY
IRIGPKAETLLTGLVKLSLAFSPKTNLLDSKIVSVKDNTINPILEEIKEKCYTNLMEICR
GLAESLGISTNAVMTVQAIRSMSQLMPETEDDMLKIDGVTKSNFEKFGQPLLEITQQAAV
EKSAIKNIEVYRENNEYCQEINVDSPNYEEMVNKMMETTCNRGRKRKTTSSINKKTKRFK
RSKGKKRKNNNSKGTSTSTMAKIRNAAIKLSAKLRPTKKPGFLPVPKKTST
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagtttccaattgaaaaagccaagtgtagttttaaaaaatctcagttctattgttgag
aaaaaaaaagaccaaaaagttacttctacaaaatcattgttttgtgagttatcttctcaa
aaagaagaaaataaaaaagggcataagactacatttaaaagtgatattgatgatttaaca
acaacagaatatatgagttatgaacaacttcaaaatacattgtttaaagactcatctcaa
aacacaattgaaaaaaaaagcttaaataaaccgtctataaaaacattggaatctcaagat
ccaaacaaaaaagaaaatataattaatgaaacaattggatgtactgtcaaaactaataaa
aagagttcatttaacaaagcgacttctatatcagaaaaaagtgaaattttatatgatact
caaaacactgaaaggaataacagtgattcaaatgtatcaaaagaaattttatttcacaat
gaaaatattaatgaacttgatgttacatctattagtactattccaaaactagaagctcat
ataaaaagtttagaaaaaatagaatatgaaatgttacaaaaagtattcaacatgtttgta
agtataccagagaagttggccattaacatccctggtcttcgagatccatcatctttacct
caccttaaaaaagttcgacaaaaaataaaaaataaattaaaagttgctaaagcacaatta
aaaaatcaacaaaaaatttcagaagttaaaaattcttcagttttagatgatatttttgtt
gcatctgataaggatgaaaaatgtataaatataatgtcagaaaacatttttgatgatatt
caactagtacatgataagaattcatgtttttcaataaatttaaataaaaattctcaaatt
aatcctgaaaataaagttaaaaacttaccatgcaccataacatcattaaaaaataattca
gaagaaaatgattacaaaactggagtaagttcaactttgaactgtcagaaatctactact
agttctcagacaattaataaaacaatacatgattgtacatatcaatcaattcaaatagat
tgtataaataccagttgtaacaaaaatcaatattcaaatacaaactcgcccataatggaa
ttcaccaaaactgactataatttttcttgggaacttttagcagtgtttaaaaaaactttt
ggacttcggcatttccgtcctaaccaatttgaagctattaatgctgctttacttggacat
aattgtttcattttaatgccaactggtggtggaaaatcattatgctatcaattgcctgca
gttatatcaaaaggtataactgttgtgatatcaccattaaaatcattgattattgaccag
actcaaaaattaaaatctttagatataccagcagctcacttattaagtggtatcactcct
gatgaagaaaatacaattttttctgaactttggggagctgatccaggattaaaattgcta
tatgtcacacctgaaaaagttgcagtaagtaataaattaacacaagttctaaacaatttg
cattgtaggaatttactagctcgaatagttattgatgaagctcattgtgtgtcacagtgg
ggtcatgattttagaccagactacaagcgattagacgtatttaaacaaaattatcaaaat
gttccaataatggtactaacagctacagcaacccaacgtgttcgtaaagatgttctgcat
cagcttaatattgaagaaataaaatggtttgtatccagttttaatcgacctaatttaatt
tatgaggtgattcctaaaaaaggtaaagcttcattattagaaattgctaatctaataaaa
tcaaaatttgcacgccagtctggtataatttattgtatgaccaaaaaagaatgtgataat
actgctctttttttgtctggagaaggaattaaagctgcaagctatcacgctggattaact
gataaaaaaagaaatgacgttcaaatgcaatggacttctaataaatcaaatgtagtttgt
gctactattgcttttggcatgggtattgacaaaccagatgtacgttatgttatacattat
tcattaccacaatctattgaaggttattatcaagaatcaggtagagctggacgagatggt
gatacagcatactgtttgttgtactataactattctgatatgcatcgtatcaaaaaactt
attgaaattggaggtggggctacttatgaaacaaaaaaagtacgctttcataatctttgt
agaattgtatcgtattgtgaaaataaaatggattgccgtcgtgctttgcaacttaactac
tttgacgaacattatgataaagctcagtgcattgctaatgagacgactacttgtgacaat
tgtcgaataaagcaatccataaagttaattgatgttacggaagaaagcattaacctaata
aaagccattcaagaaatctgtggttcaagcaataattttacatttacccactttgtagat
attttcaaagggaaaaaaactcaaaaagtggtattgtatggtcatgaacattctaatata
tttggtaagggtttacactgggatagacatgatatagaacgattaatacacaaactaata
cttgaaagttatttgagtgaagaaatggtcgcatttaaatcagatattatgaacgcatat
attaggataggccctaaagcagaaacactcttaactgggcttgttaagttatcacttgca
tttagtccaaaaacaaatttgttagacagtaaaattgttagtgttaaagataatactata
aatccaattcttgaagaaataaaagaaaaatgctacacaaatttaatggaaatatgccgt
ggcttagctgaatctttaggtatcagtacaaatgcggttatgactgtccaagccattcgt
tcaatgtcacaattaatgcctgaaactgaagatgatatgctgaaaattgatggcgtaaca
aaatcaaattttgaaaaatttggtcaaccccttttagaaattacacaacaagcagctgtt
gaaaagtcagcaattaaaaatattgaagtgtatcgagaaaataatgaatattgccaagaa
attaatgttgattctccaaattatgaagagatggtcaataaaatgatggagactacatgt
aacaggggaagaaaacgaaaaaccacttcttcaatcaataaaaaaaccaagcgttttaaa
aggagtaaaggaaaaaaaaggaaaaataataattccaaaggaacatcaacttcaacaatg
gcaaaaatacgtaatgctgcaattaaactgagtgctaagttacgtcctactaagaaacca
ggatttttaccagtgccaaaaaagacttctacataa
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