Rhopalosiphum maidis (corn leaf aphid): 113556764
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Entry
113556764 CDS
T06065
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113556764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113556764
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113556764
mRNA degradation factors
5'-3' decay
Decapping complex
113556764
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
113556764
NCBI-ProteinID:
XP_026817697
LinkDB
All DBs
Position
3:complement(57708666..57720151)
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AA seq
631 aa
AA seq
DB search
MDGEDFLTDQQAKFDDDFEEEIYDEDKYDALNDETFGNDMSDGDWEADHEKYAQYDEVIK
KKWPDETEVNDYLSNSIPSDPNVFTESLKTLPDLERELRQLHTFNHQYEVPPLPLPFQYQ
NNFNFVNQNYSINQPSNSCGPIRRPIPVQGSNPIPRNVFNAPPGFRDVNVNGHIDDILTK
PPPKVISSAISVADLERQLIDAVKVSPTYNRPVPEVNQGYLPFSPYYKREVPQYNLSNVR
VVPKNFPRNNNNVPRNLINNVKRFNNNMGYQNFPKMKNYSFDEQTDFTDYGAGFMTMREK
HWLAGIQTIQFHNSNPLEEDYYFTMYQKRHHGSSGPKPNSNFHQTDTQSRFNNSYTQLHF
ENSLGKVLIGSVITPRKMIDIETNDFAPSSASSTDRAVVAQKNSKQILLEIEHMYIPLLK
IEQTYYAIRNKAQAAPTVQQYIDELTEILSNHLHHLVSYVTIRKGKQLVHRILPHLKNPS
FLWSVFFGPSICTIISKDNEDQLLLLFLPYIRQWIFCLCLTELNQIAEYLMKNLSYVLIS
VFGISVIANMIERAEEVRPTTERKVLKQWSIFISNVICVGSENTIQRPVIGLDKKIIEQH
LTYLPLDQSITLEKRLNLVQRISFLGDTTKK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgaagactttttgacggatcaacaggcaaagtttgatgatgattttgaagaa
gaaatttacgatgaagacaaatatgatgctcttaatgatgaaacttttggaaatgatatg
tcagatggtgattgggaagctgatcacgaaaaatatgctcaatatgatgaagttataaaa
aaaaaatggcctgatgaaacagaagtcaatgattatttatccaattcaattccatccgat
ccaaatgtattcaccgagtctttgaaaacattaccagatctagaaagagaactaagacaa
ttacacacatttaaccaccaatatgaagtaccgcctttaccattacctttccaatatcaa
aataattttaattttgttaatcaaaattatagtattaatcaaccaagtaatagttgtggt
ccaattagaagaccaattccagttcaaggctcaaatcctataccacgaaatgttttcaac
gcacctcctgggttcagagatgtaaatgtaaatggacatatagatgatattttgactaaa
cctccaccaaaagtcatttcatcagcaataagtgtagctgacttggaaagacaattgatt
gatgctgtaaaagtaagtccaacttacaaccgtcctgtgccagaggtaaaccaaggatat
ttacccttttctccgtattataaacgtgaagttccccagtacaatttatcaaacgttcgt
gttgtaccaaaaaattttccaaggaataataataacgttccaagaaatcttataaataat
gttaaaagatttaataacaacatgggctatcaaaattttcctaaaatgaagaattactca
tttgatgagcagacagattttactgattatggtgctgggtttatgacaatgagagaaaaa
cattggttagctggaatacaaacaatccagttccacaatagtaacccattggaagaagat
tactattttacgatgtatcagaaacgtcatcatggttcaagtggaccaaaacccaacagt
aattttcatcaaacagatacccaatccagatttaacaattcatatacacaattacacttt
gagaattctttaggaaaagtcctgattggtagtgtgataactccaagaaagatgattgat
atagaaacaaatgactttgcaccctcttctgcatcctcaacagaccgagctgtagttgcc
caaaaaaattcaaaacaaattcttttagaaattgaacatatgtatataccactactgaaa
atagaacaaacatattatgcaataaggaacaaagcacaagcagcgcctactgtacaacaa
tacattgatgaactaacggaaatcttgtcaaaccacttacatcacttagtatcatatgtg
actatacgtaaaggaaaacaattggtacacagaattttacctcatctcaaaaacccatca
tttttatggagtgtatttttcggtccttcgatttgtacaataatttcaaaagataatgaa
gatcaattattattacttttcttaccgtacataagacaatggatattttgtttatgtctc
actgaattaaatcaaattgcggaatatttaatgaaaaatctttcatatgttttgataagt
gtttttggcatatcagttatagcaaatatgattgaacgagcagaagaagttcgacccaca
acagaacgaaaagtattgaaacaatggagtattttcattagcaatgttatatgtgttggt
tcagaaaatacaatacaaagaccagtaattggtttggacaaaaaaattatagaacagcat
ctcacatatttaccgttagatcaatctattacattagaaaaaagattaaaccttgtacaa
agaattagtttcttgggtgacacgactaagaaataa
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