Rhopalosiphum maidis (corn leaf aphid): 113556871
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Entry
113556871 CDS
T06065
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113556871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rmd03041
]
113556871
Spliceosome [BR:
rmd03041
]
Complex C
Other components
Step II factors
113556871
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_LRRK2
Beta-prop_Vps41
WD_LRWD1
NBCH_WD40
PQQ_2
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
113556871
NCBI-ProteinID:
XP_026817875
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Position
4:54746746..54751015
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AA seq
562 aa
AA seq
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MLNLKDYGSSSDEEDPSINTSQETPFNNSISVVELNEKFAVNAAPNVLPPGPDTSVQYLD
VGTKEITRNMKYEELFTPVAGPENPFLTQQQKAPKNMMTGFVEKAHINDFMFETQRRTFH
SYGYALDPTVDSNEIIGRKPDDSDEFKTVFESVPKRPADKRKRHKNDNPEDIDGYLGPWG
CYVDEEKISKPEGEDAIAIEEFLAKKHKRGKKVEDKSFKEKSILHIKDPVDYQGRSFLHI
PQDVGVNLKSNAPPDRCFLPKAHIHTWQGHTKGISAIRWFPRSAHLLMSCSMDCRVKLWD
VYRDRKCIRTYIGHTQAVRDTCFNNKGTKFLSAAYDRYVKLWDTETGDCIKSFTNHKVLY
CVKFNPEEEKQHLFVAGTADKKIVCWDTRSGNIVQEYERHLGAVNSITFVDENRRFVTTS
DDKSLRVWEWDIPVDMKYIADPTMHSMPSVTIAPNKKWLACQSMDNKIVIFSAMNRFKVN
RKKSFSGHMVAGYACSLDFSPDMSYLVSGDADGKVFIWDWKTSRLYTKWKAHDNVCIAAL
WHPHEPSKVATAGWDGLIKYWD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatctaaaagattatggtagcagtagtgatgaagaagatccatcaataaataca
tctcaagaaaccccttttaataattcaataagtgttgttgaattgaatgaaaagtttgca
gtaaatgcagctcccaatgttttgccaccaggaccagatacatcagttcagtatcttgat
gttggaacaaaagaaatcactcggaatatgaaatatgaagagcttttcacaccagttgca
ggaccagaaaatccttttttaacacaacaacaaaaagcccctaaaaacatgatgactgga
tttgttgaaaaagcacatattaatgattttatgtttgaaactcaaagaagaacatttcat
agttatggttatgctctggatcctacagttgattctaatgaaattattggtcgtaagcct
gatgattctgatgaatttaaaacagtttttgaatctgtgccgaaaaggccagctgataaa
agaaaacgtcataaaaatgacaatccagaagatattgatggctatctaggaccttgggga
tgttatgttgatgaagagaaaatatcaaaaccagaaggagaagatgcaattgctattgaa
gaattccttgcaaaaaaacataaacgtggcaaaaaagttgaagataaaagctttaaagaa
aaatcaattctgcatattaaagatcctgttgattatcaaggacgttcatttttacatatt
ccacaagatgtaggtgttaatcttaaatcaaatgcacctcctgatagatgtttccttcct
aaagcacatatacatacatggcagggtcatactaaaggtatatcagctattagatggttc
ccgaggtctgctcatttacttatgtcttgcagcatggattgtagagtcaagttgtgggat
gtttatagagatagaaaatgtattcgaacttatataggccatacacaagcagttagagat
acatgtttcaacaataaagggacaaaatttttatcagcagcgtatgatcggtatgttaaa
ctatgggacacggaaactggagattgcataaaaagttttacaaatcataaagtattatat
tgtgtaaaattcaacccagaagaagaaaaacaacatttatttgttgctggtacagctgat
aaaaaaattgtttgttgggacactagatcaggaaatattgttcaagaatatgaaagacat
ttaggagcagttaacagtatcacttttgttgatgaaaatagacgatttgtcacaacatct
gatgataaaagtttacgcgtttgggaatgggacataccagtagatatgaagtatatagcc
gatccaactatgcattcaatgccaagtgtaacaattgcgccaaataaaaagtggctagct
tgtcagagtatggacaataaaatagttatattctcagcaatgaatcgttttaaagtgaat
agaaaaaagagtttttctggtcatatggtggctggatatgcctgttcattagatttttca
cctgatatgagttacctagtctcaggagatgctgatggaaaagtatttatttgggattgg
aaaacaagtcgtttgtatacaaaatggaaagcacacgataatgtttgtattgctgcatta
tggcatccacacgaacctagcaaagtagcaactgctggatgggatggacttatcaaatat
tgggattaa
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